Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h19f
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.19 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.3  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   5.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 206 WYK*TLPNGLYMGEIIEFSYQRDINPRYMETLRQFI*FYDVRRSRTYTVSQSRNYVLF 379
           +Y   L +GLY  +  +FS     NP+Y E   Q+    D+  ++++    S+N VLF
Sbjct: 269 YYSPLLSHGLYYVDTEQFS-----NPQYEENNVQYEGSQDILNTQSFGKVVSKNGVLF 321


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 168 SPYLRPILKRRPALFPVLL 112
           SPY R +LK  P   PV++
Sbjct: 54  SPYFRELLKSTPCKHPVIV 72


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 349 RFPITKLRSVCPKMNLA 399
           +F  T+  SVC ++NLA
Sbjct: 26  KFKTTRYLSVCERLNLA 42


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 313 YKLPKCFHISWVDISLVTEFDNFSHIQAIWKCLFIPTGL 197
           ++L K    S   I L+ E +NF +      C++  TG+
Sbjct: 43  HELKKLRDSSEARIKLINEEENFRNYGCFLACIWQQTGV 81



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 228 MACIWEKLSNSVTKEISTQDI 290
           +ACIW++       E+ST +I
Sbjct: 72  LACIWQQTGVMNGSELSTYNI 92


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 EETEDKDGRSPSPKSTPRSNSKGTA 512
           E+   K  +S SP+S  RSN+  T+
Sbjct: 70  EKKLSKRSKSRSPESRGRSNASNTS 94



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 PENEFGALMKQKSKEVLVSEETEDKDGRS 467
           PE+   +     SK  ++SE+ E  DG S
Sbjct: 82  PESRGRSNASNTSKTFILSEKLESSDGTS 110


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 EETEDKDGRSPSPKSTPRSNSKGTA 512
           E+   K  +S SP+S  RSN+  T+
Sbjct: 70  EKKLSKRSKSRSPESRGRSNASNTS 94



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 PENEFGALMKQKSKEVLVSEETEDKDGRS 467
           PE+   +     SK  ++SE+ E  DG S
Sbjct: 82  PESRGRSNASNTSKTFILSEKLESSDGTS 110


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 EETEDKDGRSPSPKSTPRSNSKGTA 512
           E+   K  +S SP+S  RSN+  T+
Sbjct: 70  EKKLSKRSKSRSPESRGRSNASNTS 94



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 PENEFGALMKQKSKEVLVSEETEDKDGRS 467
           PE+   +     SK  ++SE+ E  DG S
Sbjct: 82  PESRGRSNASNTSKTFILSEKLESSDGTS 110


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 EETEDKDGRSPSPKSTPRSNSKGTA 512
           E+   K  +S SP+S  RSN+  T+
Sbjct: 70  EKKLSKRSKSRSPESRGRSNASNTS 94



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 PENEFGALMKQKSKEVLVSEETEDKDGRS 467
           PE+   +     SK  ++SE+ E  DG S
Sbjct: 82  PESRGRSNASNTSKTFILSEKLESSDGTS 110


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 EETEDKDGRSPSPKSTPRSNSKGTA 512
           E+   K  +S SP+S  RSN+  T+
Sbjct: 70  EKKLSKRSKSRSPESRGRSNASNTS 94



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 PENEFGALMKQKSKEVLVSEETEDKDGRS 467
           PE+   +     SK  ++SE+ E  DG S
Sbjct: 82  PESRGRSNASNTSKTFILSEKLESSDGTS 110


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 EETEDKDGRSPSPKSTPRSNSKGTA 512
           E+   K  +S SP+S  RSN+  T+
Sbjct: 70  EKKLSKRSKSRSPESRGRSNASNTS 94



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 PENEFGALMKQKSKEVLVSEETEDKDGRS 467
           PE+   +     SK  ++SE+ E  DG S
Sbjct: 82  PESRGRSNASNTSKTFILSEKLESSDGTS 110


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 EETEDKDGRSPSPKSTPRSNSKGTA 512
           E+   K  +S SP+S  RSN+  T+
Sbjct: 70  EKKLSKRSKSRSPESRGRSNASNTS 94



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 PENEFGALMKQKSKEVLVSEETEDKDGRS 467
           PE+   +     SK  ++SE+ E  DG S
Sbjct: 82  PESRGRSNASNTSKTFILSEKLESSDGTS 110


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 EETEDKDGRSPSPKSTPRSNSKGTA 512
           E+   K  +S SP+S  RSN+  T+
Sbjct: 70  EKKLSKRSKSRSPESRGRSNASNTS 94



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 PENEFGALMKQKSKEVLVSEETEDKDGRS 467
           PE+   +     SK  ++SE+ E  DG S
Sbjct: 82  PESRGRSNASNTSKTFILSEKLESSDGTS 110


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 489 RSNSKGTASKDNMSK 533
           R+ ++G  S DNMSK
Sbjct: 245 RTRAEGRLSSDNMSK 259


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 435 SEETEDKDGRSPS 473
           SEET  KDG S S
Sbjct: 307 SEETHQKDGSSDS 319


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 435 SEETEDKDGRSPS 473
           SEET  KDG S S
Sbjct: 222 SEETHQKDGSSDS 234


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 435 SEETEDKDGRSPS 473
           SEET  KDG S S
Sbjct: 541 SEETHQKDGSSDS 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,111
Number of Sequences: 438
Number of extensions: 3477
Number of successful extensions: 29
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)