Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h18f
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    28   5.6  
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375...    28   7.4  
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304...    27   9.8  

>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 305 IDFLIQKDRKKNYNYLTSCLLIDY 376
           +DFL+Q + KK   Y  +C  +DY
Sbjct: 276 VDFLVQNNGKKIMVYFATCACVDY 299


>09_03_0097 +
           12335425-12336197,12336438-12336618,12337409-12337572,
           12338132-12338393,12338488-12338604
          Length = 498

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -3

Query: 280 LNSFNDLNAKYISLCQVTLYCNHFRLIPNRIVYIYFINRSFNVNLACSI-VRNVI 119
           L  F DL  +Y+ +C++ L  +HFR +    V  Y I+ +    LAC++ VR+++
Sbjct: 417 LKVFGDLE-QYLIVCELVLDLDHFRDLVTDEVANYVISTAL---LACTVPVRDIL 467


>09_04_0609 - 18929600-18929646,18929753-18929924,18930304-18930498,
            18930691-18930801,18930885-18931097,18931643-18931720,
            18931894-18932001,18932175-18932316,18932413-18933761,
            18934492-18935121
          Length = 1014

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
 Frame = +2

Query: 8    CSELINLVRNKRRIY*KRTY*NQIIMAILEKQDELPVNYIPDNAAGQIDIKGSIDEVNIN 187
            C  +I+ +     I  +  Y N ++  +LEK +E     I    AGQ      +  ++ N
Sbjct: 852  CLCIIDEILQSACILAQDQYGNYVVQHVLEKGNEHERGQIITKLAGQ------VVPMSQN 905

Query: 188  NPIGNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRKKNY---NYLTS 358
                N  E     G   E ++L  +I++  E  +Y+L     +I KD+  NY     LT+
Sbjct: 906  KFASNVIERCFEHGGSAERELLVKEILKQTEGNNYLL-----VIMKDQYANYVVQKMLTT 960

Query: 359  C 361
            C
Sbjct: 961  C 961


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,014
Number of Sequences: 37544
Number of extensions: 244644
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)