Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h18f
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.27 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.36 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 564 LTCHMNTHTYTK*TDCKFCTNNKSCDNN 481
           LT H  THT  K   C++C+ + S   N
Sbjct: 107 LTRHYRTHTGEKPYQCEYCSKSFSVKEN 134



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 582 YLYSLILTCHMNTHTYTK*TDCKFCTNNKSC 490
           ++ S  L  HM THT  K   CK C    +C
Sbjct: 185 FIQSGQLVIHMRTHTGEKPYVCKACGKGFTC 215


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 525 TDCKFCTNNKSCDNNYFKYLIRHA 454
           T+C FC NN   +  Y K+L++ A
Sbjct: 38  TECVFCRNNGEEEAYYRKHLLKDA 61


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 122 YIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAIQGYLT 238
           ++PD  AG  +I G   +       G     IA+ GY T
Sbjct: 235 FMPDPLAGDYNIGGLNFQWGEEGIFGMSLSPIAVNGYRT 273


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 167 IDEVNI-NNPIGNQSEVIAIQGYLTEADIL 253
           +D  N+   P+GN+SE + +   LT   I+
Sbjct: 32  LDTYNVLERPVGNESEPLVLSFGLTLMQII 61


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +2

Query: 293 VLWFIDFLIQKDRKKNYNYLTSCLLIDYP 379
           + W     ++ D +  ++YL +C   D+P
Sbjct: 13  LFWQNSASLENDNEFGFSYLLNCKNYDHP 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,655
Number of Sequences: 438
Number of extensions: 3690
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)