Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h17f
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0442 + 3495333-3496484 30 1.5
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 2.7
07_01_0121 - 924306-925838 28 6.2
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600... 27 8.2
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 27 8.2
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 27 8.2
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96... 27 8.2
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 27 8.2
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406... 27 8.2
>12_01_0442 + 3495333-3496484
Length = 383
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 93 VTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPR----CSQGSVKDTPKYSE 257
VTR R A A A PP +P+S KT+ + K +P+ C +TP++ E
Sbjct: 203 VTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCVHCGSTETPQWRE 261
>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -3
Query: 555 IRFNIYSSKTRIVFLNSTKRQCK*SPCTLHFIYEKKKNVA*KYSKLFLIEKHTPRSY 385
+R ++ S ++ V L ST+ + + S + EK+K V+ KYS L L+E Y
Sbjct: 1001 VRDVMWKSNSKTVGLRSTRNKRESSNFPGTHLLEKRKQVSMKYSWLMLLEHEDSYRY 1057
>07_01_0121 - 924306-925838
Length = 510
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -3
Query: 567 VLGYIRFNIYSSKTRIVFLNSTKRQCK*SPCTLHFIYEK---KKNVA*KYSKLFLIEKHT 397
VLG ++ + + ++FLN R C+ P ++H + +K + + ++ FL+++ T
Sbjct: 128 VLGRLQVTLEDMREFVIFLNFCPRLCR-QPYSMHLLIDKCLFGRQMEMEHIMNFLLKEDT 186
Query: 396 P 394
P
Sbjct: 187 P 187
>12_02_0188 -
15158824-15159215,15159299-15159809,15159885-15160015,
15160107-15160310,15160385-15161066,15161158-15161414,
15161491-15161631,15161731-15162136
Length = 907
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 120 ADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGCDS 287
AD R +PPK+P+S + + +R S + +P Y E N+ D+
Sbjct: 694 ADTHIGKRKTRQPPKKPTSKRAKGTGPQSRNVDSDEETEHSPDYQESNDSSSRTDT 749
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 81 TSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRP 212
+SP R+ R G R + RA RPP + S R T L +P
Sbjct: 13 SSPWPARAPRRGGLLRARAVRAAPRPPSKWSLGSWRSLTALQQP 56
>07_01_1149 +
10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 240 YLSRTLANISAESTLFGPSFLPKKVVLVVFSRPLPFSADLRQYTVW 103
Y ++ LAN+ +S F PS KK++ VV ++ +P T W
Sbjct: 514 YSTQPLANV--KSIKFKPSLASKKIITVVSAKDIPTGGRNIGSTFW 557
>07_01_0129 -
959600-959625,960100-961428,961585-961657,962185-962226
Length = 489
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -3
Query: 567 VLGYIRFNIYSSKTRIVFLNSTKRQCK*SPCTLHFIYEK---KKNVA*KYSKLFLIEKHT 397
VLG + I + ++FLN+ R C+ P ++H + + + + ++ FL++++T
Sbjct: 159 VLGSLEVAIEDTSEFVMFLNNCPRLCR-QPYSMHLLLDNCLFSRQLEREHIMNFLLKENT 217
Query: 396 P 394
P
Sbjct: 218 P 218
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 156 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQEGC 281
PP+RP S + R ++ + RP ++ + P QEGC
Sbjct: 360 PPRRPQSLRHRSRSPIHRP------IRSPSRSISPRRDQEGC 395
>01_06_0362 +
28739969-28740232,28740336-28740452,28740560-28740660,
28741251-28741322,28741433-28741514,28741607-28741687,
28742548-28742589,28743009-28743047,28743278-28743343,
28743444-28743590,28743638-28743652
Length = 341
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 205 VNFVWTLVF--AEEGRFGGLQQALAVFRRSAPVYRLDRVTAG 86
++F+W F EEG+F +V+ SAP ++LDR T G
Sbjct: 79 LDFLWDAFFRNGEEGKF-------SVYVHSAPGFQLDRTTTG 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,576
Number of Sequences: 37544
Number of extensions: 282253
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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