Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h16f
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.6  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   2.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   3.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.7  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    25   6.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   6.4  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   6.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   8.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   8.5  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 VFDGDTLPKQFCYDCTIKIESA 324
           + DG TL KQ C  C+I+ +S+
Sbjct: 48  ILDGKTLEKQHCESCSIREDSS 69


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +1

Query: 292 CYDCTIKIESAYTFITEALKVNVTLKXXXXXXXXXXXXQPDLKNTEGLESRLTLPECKIS 471
           C   T++I  A   +  ALK                  +   KN +G  SR    +C I+
Sbjct: 324 CPASTVQILGAEKALFRALKTRGNTPKYGIIYHSSFIGKAGAKN-KGRISRFLANKCSIA 382

Query: 472 STIENYSDIILNALDYV 522
           S I+N+SD    A   V
Sbjct: 383 SRIDNFSDAPTTAFGQV 399


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 386  VFDIMFLRVTFTFKASVMNVYADSILIVQS*QNCFGRV 273
            V+DI F  +TF F+ S  N   D +L ++  Q  F  +
Sbjct: 1130 VYDISFGSLTFYFQKSYFNAIYDFLLKLKRFQELFSSI 1167


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 297 RLHY*NRISIHIHHGSLKSKCNS 365
           ++H   ++S++IHHGS K   +S
Sbjct: 322 KVHPSKKLSVYIHHGSTKKNLDS 344


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 478 IENYSDIILNALDYVHLNESEPEKVPEQNVLNNHQER 588
           I  YS  +L ALD+ H        V   NV+ +H++R
Sbjct: 137 IRYYSYELLKALDFCHSRGIMHRDVKPHNVMIDHKKR 173


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -1

Query: 494 SL*FSIVLLILHSGKVR-RLSKPSVFFRSGCTVMTMLVFDIMFLRVT-FTFKASVMNVYA 321
           SL FS  +L  H+   + ++ K  +FFRSG T +     D          ++A  +N Y 
Sbjct: 727 SLTFSKAILEKHADPTKYQIGKTKIFFRSGVTPLLESARDKALKHAAHLLYEAFAVNYYR 786

Query: 320 DSILI 306
              L+
Sbjct: 787 TRFLL 791


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 412  DLKNTEGLESRLT-LPECKISSTIENYSDIILNALDYVHLNESE 540
            D +  + L+  LT +P    S  + N++DI+ + LDY+ +++ +
Sbjct: 1096 DAETIKALDEVLTEIPSLTESCILINHADILSSILDYLQVSKDK 1139


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 418 KNTEGLESRLTLPECKISSTIENYSDIILNALDYVHLNES 537
           K    +++R T      +S IE   + ILNAL+   LNE+
Sbjct: 232 KKNNAMQNRTTSNIKSNASAIEKNKETILNALNNSTLNEN 271


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 193  SWERENFDPKAVEMFCFCTNIK 258
            ++EREN D   VE F   TNI+
Sbjct: 991  TYERENIDAGVVESFVVGTNIE 1012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,052
Number of Sequences: 5004
Number of extensions: 40848
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)