Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h16f
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine rece...    30   1.5  
Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform b protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = -1

Query: 560 CSGTFSGSLSLRCT*SRAFKIMS-L*FSIVLLILHSGKVRRLSKPSVFFRSG------CT 402
           C+ T +    ++CT    F +M+ L F   L ILHS K  R ++  V  R        C 
Sbjct: 176 CNSTENALEMIKCT----FIMMAILNFITFLKILHSYKKSRKTETVVGARKRMCKNILCF 231

Query: 401 VMTMLVFDIMFLRVTFTFKAS 339
           + T+L   + F+ +TFTFK S
Sbjct: 232 LQTILQDSLYFIDMTFTFKLS 252


>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 434 KPSVFFRSGCTVMTMLVFDIMFLRVTFTFKASVMNVYADS 315
           K   F RS C V  +++  I    V FTF  + +N+ +D+
Sbjct: 19  KHGYFARSCCVVFILIICVIFVFSVIFTFMQNPINLNSDN 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,825,029
Number of Sequences: 27780
Number of extensions: 219654
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)