Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h16f
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.2  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 263 NTFILVQKQNISTAFGSKFSLSQDATSFMQLLHN 162
           NTFILV + N +  F +  S+ +   +   L  N
Sbjct: 333 NTFILVAENNTTMVFCNDLSIDRSTNTMYVLSDN 366


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 171 ELHERSSVLGERELRSKSC 227
           E + RS+VL  RE+ S SC
Sbjct: 323 ERNPRSAVLAAREITSSSC 341


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 240 TKHFHSFWIEVLSLPGRYFFHAT 172
           T  F +FW+E  ++P R     T
Sbjct: 316 TSSFITFWLEWNAVPARVMIGVT 338


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 240 TKHFHSFWIEVLSLPGRYFFHAT 172
           T  F +FW+E  ++P R     T
Sbjct: 285 TSSFITFWLEWNAVPARVMIGVT 307


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 240 TKHFHSFWIEVLSLPGRYFFHAT 172
           T  F +FW+E  ++P R     T
Sbjct: 336 TSSFITFWLEWNAVPARVMIGVT 358


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 240 TKHFHSFWIEVLSLPGRYFFHAT 172
           T  F +FW+E  ++P R     T
Sbjct: 285 TSSFITFWLEWNAVPARVMIGVT 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,588
Number of Sequences: 438
Number of extensions: 2639
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)