Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h14f
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    25   0.64 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.0  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.9  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 143 LHFSFYFWRILVVEARVFGIL 81
           LHF+F  W++L      FG L
Sbjct: 53  LHFTFKSWKVLYTSLTSFGYL 73


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +3

Query: 117  SPKVKAEMESSVAWHRPMSAGSVQEEELMQKSARAMTQATDPLE 248
            S K+K E E      R   +   +EE+  + S   +T    P E
Sbjct: 881  SVKIKREAEDRDEDERSFHSNGAKEEDEDKPSVSPLTSPRQPAE 924


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 448 QSVLMNSLLKSVLPCRNRVVTL*NKHSRS 534
           +S++MN+    +LPC   +V   N+H +S
Sbjct: 321 ESIIMNN----ILPCVKELVADPNQHVKS 345


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,415
Number of Sequences: 336
Number of extensions: 2909
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)