Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h13f
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    39   6e-04
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    29   0.69 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   1.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.4  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   8.5  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 29/82 (35%), Positives = 37/82 (45%)
 Frame = +2

Query: 353 EGVVMELADCALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFK 532
           EG  M+L   A PL           +  KD  A  +     +K G  R DLL AN+ IFK
Sbjct: 59  EGEAMDLNHAA-PLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFK 117

Query: 533 EQGQALDKVARKDVKVLVVGNP 598
           E  + + K   KD  +LV  NP
Sbjct: 118 EILREVTKYT-KDAILLVATNP 138


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 37/165 (22%), Positives = 54/165 (32%), Gaps = 1/165 (0%)
 Frame = +3

Query: 21  YVVHTYIFMFYLCIKQSRNSTEFYFFKACVSSSFSF-IV*ECKTSDNTFKLA*RDNYTGI 197
           +V+  YI+    C K++ N+ +  F   C+  S SF  V  C   D  F       +   
Sbjct: 193 FVIAPYIYFSVRCFKKNVNNPKDIFLHLCIFVSVSFATVLACILEDYKFYGVFVITFWNN 252

Query: 198 SKWXXXXXXXXXXXXXXXHTHFFIKLRLEQFLDLSNLSSSTFLILRL*WVYLKVLSWSWL 377
            K+                THFF  + L        L      + +L W   K  +W WL
Sbjct: 253 LKYNSQIENLSQHGLHSRLTHFFTNMPL--------LCGPLIFVPKL-WDVRKPATWLWL 303

Query: 378 TVLCHFWLGFFLQQIXXXXXXXXXXXXXXXXCPERKVWRGRIFLL 512
             L  F L  F  Q                 C  R  W   +F++
Sbjct: 304 --LPVFILSLFPHQEPRFLLPAASIFIVNSGCLVRSYWIKFLFVM 346


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 486 PSFLGIAPTRKAAA--TSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWR 313
           P F  + P RK +A  T+L  SS       P  + RA SANS+T+P   P   A S + R
Sbjct: 516 PQFSAV-PHRKVSAQDTNLMGSSPGMYNHMPYLN-RATSANSITSPGVLPEGMAASLKKR 573

Query: 312 KT 307
            T
Sbjct: 574 TT 575


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
 Frame = -1

Query: 591 PTTRTFTSLRATLSKAWPCSLKMRTLAARRSFLSIPSFLGIAPTRKAA-----ATSLKAS 427
           P+  T + L  +   + P S    T A   S   + S      T  ++     +T   ++
Sbjct: 521 PSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATSASSTPFGNSTITSSA 580

Query: 426 SGFAVGRTPAKSGRAQSANSMTTPSSTPI 340
           SG     T   SG    + S+TTP+STP+
Sbjct: 581 SGSTGEFTNTNSGNGDVSGSVTTPTSTPL 609


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 393 SGRAQSANSMTTPSSTPIIGAISRRWRKTGC*GPKTAPDAI 271
           + R+ S N   TPSS+P   + SR +       PK + D I
Sbjct: 147 TNRSSSDNGFLTPSSSPRSPSCSRVFNAVQLCSPKKSKDDI 187


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 334 RNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNNSDRFSHFDI 194
           RNI +++E   L++KN +  +  K  + +L   T  +N D F HFD+
Sbjct: 174 RNILQIDE---LKTKNETIISFAKAHILDLI-VTLVSNLDEFEHFDV 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,528
Number of Sequences: 5004
Number of extensions: 45368
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)