Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h13f
         (600 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY128413-1|AAM75006.1|  337|Drosophila melanogaster GH01866p pro...   222   3e-58
AE014134-1864|AAF52935.2|  337|Drosophila melanogaster CG5362-PA...   222   3e-58
Z50152-1|CAA90513.1| 3726|Drosophila melanogaster trithorax prot...    33   0.30 
Z31725-1|CAA83516.1| 3726|Drosophila melanogaster predicted trit...    33   0.30 
M31617-1|AAA29025.1| 3759|Drosophila melanogaster protein ( D.me...    33   0.30 
AE014297-1825|AAN13599.1| 3726|Drosophila melanogaster CG8651-PD...    33   0.30 
AE014297-1824|AAF55041.2| 3726|Drosophila melanogaster CG8651-PA...    33   0.30 
AE014298-2775|AAF48890.1|  722|Drosophila melanogaster CG7095-PA...    30   2.8  
U22419-1|AAA83150.1|  526|Drosophila melanogaster fzy protein.         29   3.7  
BT029432-1|ABK57089.1|  526|Drosophila melanogaster LD44795p pro...    29   3.7  
BT010249-1|AAQ23567.1|  526|Drosophila melanogaster RE39287p pro...    29   3.7  
AE014134-2699|AAF53523.1|  526|Drosophila melanogaster CG4274-PA...    29   3.7  
AE014297-754|AAF54238.1|  819|Drosophila melanogaster CG11718-PA...    29   4.8  
U77947-1|AAB41404.1| 2416|Drosophila melanogaster adenomatous po...    28   8.4  

>AY128413-1|AAM75006.1|  337|Drosophila melanogaster GH01866p
           protein.
          Length = 337

 Score =  222 bits (542), Expect = 3e-58
 Identities = 108/132 (81%), Positives = 117/132 (88%)
 Frame = +2

Query: 203 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 382
           MAEPIRVVVTGAAGQIAYSLLY IA G VFG  QP+ LHLLDI PM+GVLEGVVMELADC
Sbjct: 1   MAEPIRVVVTGAAGQIAYSLLYMIARGEVFGKDQPIVLHLLDIPPMVGVLEGVVMELADC 60

Query: 383 ALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVA 562
           ALPLL  V+PT +P   FKDV+AAFLVGAMPRKEGMERKDLL+ANV+IF+ QGQALDK A
Sbjct: 61  ALPLLVEVVPTTDPAVGFKDVSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALDKFA 120

Query: 563 RKDVKVLVVGNP 598
           +KDVKVLVVGNP
Sbjct: 121 KKDVKVLVVGNP 132


>AE014134-1864|AAF52935.2|  337|Drosophila melanogaster CG5362-PA
           protein.
          Length = 337

 Score =  222 bits (542), Expect = 3e-58
 Identities = 108/132 (81%), Positives = 117/132 (88%)
 Frame = +2

Query: 203 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 382
           MAEPIRVVVTGAAGQIAYSLLY IA G VFG  QP+ LHLLDI PM+GVLEGVVMELADC
Sbjct: 1   MAEPIRVVVTGAAGQIAYSLLYMIARGEVFGKDQPIVLHLLDIPPMVGVLEGVVMELADC 60

Query: 383 ALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVA 562
           ALPLL  V+PT +P   FKDV+AAFLVGAMPRKEGMERKDLL+ANV+IF+ QGQALDK A
Sbjct: 61  ALPLLVEVVPTTDPAVGFKDVSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALDKFA 120

Query: 563 RKDVKVLVVGNP 598
           +KDVKVLVVGNP
Sbjct: 121 KKDVKVLVVGNP 132


>Z50152-1|CAA90513.1| 3726|Drosophila melanogaster trithorax protein
           trxII protein.
          Length = 3726

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 534 SLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSAN-SMTT 358
           S   RT +A  S  S     G +P   + A+S  ASSG + G++ AKS  A S   + TT
Sbjct: 164 SKSSRTFSASTSVTSSGRSSGSSPDGNSGASSDGASSGISCGKSTAKSTEASSGKLAKTT 223

Query: 357 PSST 346
            + T
Sbjct: 224 GAGT 227


>Z31725-1|CAA83516.1| 3726|Drosophila melanogaster predicted
           trithorax protein protein.
          Length = 3726

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 534 SLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSAN-SMTT 358
           S   RT +A  S  S     G +P   + A+S  ASSG + G++ AKS  A S   + TT
Sbjct: 164 SKSSRTFSASTSVTSSGRSSGSSPDGNSGASSDGASSGISCGKSTAKSTEASSGKLAKTT 223

Query: 357 PSST 346
            + T
Sbjct: 224 GAGT 227


>M31617-1|AAA29025.1| 3759|Drosophila melanogaster protein (
           D.melanogaster zinc-binding protein (trithorax) mRNA,
           complete cds. ).
          Length = 3759

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 534 SLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSAN-SMTT 358
           S   RT +A  S  S     G +P   + A+S  ASSG + G++ AKS  A S   + TT
Sbjct: 164 SKSSRTFSASTSVTSSGRSSGSSPDGNSGASSDGASSGISCGKSTAKSTEASSGKLAKTT 223

Query: 357 PSST 346
            + T
Sbjct: 224 GAGT 227


>AE014297-1825|AAN13599.1| 3726|Drosophila melanogaster CG8651-PD,
           isoform D protein.
          Length = 3726

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 534 SLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSAN-SMTT 358
           S   RT +A  S  S     G +P   + A+S  ASSG + G++ AKS  A S   + TT
Sbjct: 164 SKSSRTFSASTSVTSSGRSSGSSPDGNSGASSDGASSGISCGKSTAKSTEASSGKLAKTT 223

Query: 357 PSST 346
            + T
Sbjct: 224 GAGT 227


>AE014297-1824|AAF55041.2| 3726|Drosophila melanogaster CG8651-PA,
           isoform A protein.
          Length = 3726

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 534 SLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSAN-SMTT 358
           S   RT +A  S  S     G +P   + A+S  ASSG + G++ AKS  A S   + TT
Sbjct: 164 SKSSRTFSASTSVTSSGRSSGSSPDGNSGASSDGASSGISCGKSTAKSTEASSGKLAKTT 223

Query: 357 PSST 346
            + T
Sbjct: 224 GAGT 227


>AE014298-2775|AAF48890.1|  722|Drosophila melanogaster CG7095-PA
           protein.
          Length = 722

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = -1

Query: 600 AGLPTTRTFTSLRATLSKAWPCSLKMRTLAARRSFLSI-PSFLGIAPTRKAAATSLKASS 424
           A  P  ++    + +L  + P SL ++  A  ++   + PS  G       AAT+  +SS
Sbjct: 38  ATTPNPQSSAQAQLSLVPSKPTSLSLQPHAVLQAMQQLSPSAGGNNNASSTAATATSSSS 97

Query: 423 GFA-VGRTPAKSGRAQSANSMTTPSSTPIIGA 331
           G A  G +PA +  A +A S TT ++T   G+
Sbjct: 98  GNANSGSSPALASTA-TAISATTQAATAFSGS 128


>U22419-1|AAA83150.1|  526|Drosophila melanogaster fzy protein.
          Length = 526

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 462 TRKAAATSLKAS-SGF-AVGRTPAKSGRAQSANSMTTPSSTP 343
           TR   + S   S SG  A  +TP KS   ++  S TTPS TP
Sbjct: 42  TRSVLSVSYNTSFSGVQAPTKTPGKSSEGKTKKSNTTPSKTP 83


>BT029432-1|ABK57089.1|  526|Drosophila melanogaster LD44795p
           protein.
          Length = 526

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 462 TRKAAATSLKAS-SGF-AVGRTPAKSGRAQSANSMTTPSSTP 343
           TR   + S   S SG  A  +TP KS   ++  S TTPS TP
Sbjct: 42  TRSVLSVSYNTSFSGVQAPTKTPGKSSEGKTKKSNTTPSKTP 83


>BT010249-1|AAQ23567.1|  526|Drosophila melanogaster RE39287p
           protein.
          Length = 526

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 462 TRKAAATSLKAS-SGF-AVGRTPAKSGRAQSANSMTTPSSTP 343
           TR   + S   S SG  A  +TP KS   ++  S TTPS TP
Sbjct: 42  TRSVLSVSYNTSFSGVQAPTKTPGKSSEGKTKKSNTTPSKTP 83


>AE014134-2699|AAF53523.1|  526|Drosophila melanogaster CG4274-PA
           protein.
          Length = 526

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 462 TRKAAATSLKAS-SGF-AVGRTPAKSGRAQSANSMTTPSSTP 343
           TR   + S   S SG  A  +TP KS   ++  S TTPS TP
Sbjct: 42  TRSVLSVSYNTSFSGVQAPTKTPGKSSEGKTKKSNTTPSKTP 83


>AE014297-754|AAF54238.1|  819|Drosophila melanogaster CG11718-PA
           protein.
          Length = 819

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 468 APTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPS 352
           A   + A+T+  AS+G   GRTP  S    + N  T PS
Sbjct: 661 ASRAQTASTTPTASAGMGAGRTPKHSTPQLNHNKYTAPS 699


>U77947-1|AAB41404.1| 2416|Drosophila melanogaster adenomatous
            polyposis coli protein.
          Length = 2416

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 486  PSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSS 349
            P  + +AP R+        S   A G++PA S       S TTP S
Sbjct: 2279 PKRIPLAPARRMTPQRANTSLRLAAGKSPAASRVVSGRVSSTTPPS 2324


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,070,782
Number of Sequences: 53049
Number of extensions: 531061
Number of successful extensions: 1881
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1880
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)