Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h12f
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   5.0  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.7  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   8.7  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 325 ALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSG 429
           A+FGQND+ ++LG    H  +     P WI  + G
Sbjct: 69  AMFGQNDFSNLLGLKLDHTAR-----PLWINPIDG 98


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 484 PRLRPTKWKEIQKRLSFLYRKLNRK 558
           P+ R +KWK+IQ    F    LNR+
Sbjct: 66  PKKRVSKWKDIQLFEKFAEPSLNRE 90


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 286 PEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPS 408
           P Y  + P  +++AL G+N    I     L P   L  IPS
Sbjct: 139 PNYS-NKPSKLKRALSGENSVFSIHQRNTLSPSSNLPRIPS 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,440
Number of Sequences: 5004
Number of extensions: 57646
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)