Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h12f
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    29   2.2  
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    29   3.9  
07_01_0854 + 7000214-7001044                                           28   6.8  
01_01_1217 + 9830435-9830770                                           28   6.8  
07_01_0437 - 3322132-3322251,3322345-3322569,3322953-3323120,332...    27   8.9  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    27   8.9  

>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +1

Query: 367 GNLHPVKTLYNIPSWIRGVSGHEYHI--LLRKKKMW--AKTGTPRLRPTKWKEIQKRLSF 534
           GNLH    +   PS+ +GVS H+  +  L RKK  +  AK  T + +  +  + + R S+
Sbjct: 527 GNLHEFSKVLKNPSYAQGVSEHQNSMKSLKRKKAQFSEAKISTRKTKNIRRTQTKSRFSW 586


>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -1

Query: 575 EGPVFVF-LFSFLYRNDKRFCISF-HFVG--LNLGVPV---FAHIFFFL 450
           EGP +   L S +Y+N K FC+ + HF G   NLG  +   +A +  FL
Sbjct: 184 EGPFYAGELKSMVYQNSKTFCVYYGHFQGQYANLGTKISNSYARVVGFL 232


>07_01_0854 + 7000214-7001044
          Length = 276

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
 Frame = +1

Query: 250 LLPRSEGKALPIP------EYRPDNPWSV-RKALFGQNDY 348
           L PR+ G+A P+P       YR D PW +  +ALFG+ ++
Sbjct: 35  LCPRAAGRAAPVPIIAELDLYRHD-PWDLPHRALFGRREW 73


>01_01_1217 + 9830435-9830770
          Length = 111

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 473 FAHIFFFLSRI*YSCPLTPRIHDGILYNVLTGCRLP 366
           F  +FFF+  +      TP  H G++    T CR+P
Sbjct: 7   FIFLFFFIFLVFLPLLPTPPWHSGVVCRTTTPCRVP 42


>07_01_0437 -
           3322132-3322251,3322345-3322569,3322953-3323120,
           3323207-3323322,3323394-3323546,3323655-3323798,
           3324475-3325255
          Length = 568

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 139 LSVVWKPTVN---VVRTRYHADKKRLVRRYGYQEKIWRGGLL 255
           LS+ +KP  N   VV + Y+   + L++ YG +  +W  G++
Sbjct: 254 LSIFFKPGENYSDVVGSPYYVAPEVLMKHYGREVDVWSAGVI 295


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 283 IPEYRPDNPWSV 318
           IP+Y P+NPW+V
Sbjct: 145 IPDYHPENPWNV 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,518
Number of Sequences: 37544
Number of extensions: 327853
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)