Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h12f
         (614 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014329-1|AAH14329.1|  128|Homo sapiens mitochondrial ribosomal...    60   5e-09
BC000191-1|AAH00191.1|  128|Homo sapiens mitochondrial ribosomal...    60   5e-09
AF212248-1|AAK14931.1|  128|Homo sapiens CDA09 protein.                60   5e-09
AB049959-1|BAB41012.1|  128|Homo sapiens mitochondrial ribosomal...    60   5e-09

>BC014329-1|AAH14329.1|  128|Homo sapiens mitochondrial ribosomal
           protein L51 protein.
          Length = 128

 Score = 60.5 bits (140), Expect = 5e-09
 Identities = 37/104 (35%), Positives = 55/104 (52%)
 Frame = +1

Query: 253 LPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSGH 432
           +PR  G  L +P  +  + W+ ++A+FG  D I ILG    HP K L   P W+RG  G+
Sbjct: 28  VPRLIGIRLTLPPPKVVDRWNEKRAMFGVYDNIGILGNFEKHP-KELIRGPIWLRGWKGN 86

Query: 433 EYHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRKTK 564
           E    +RK+KM    G+ R+       + KR+ +LY+  NR  K
Sbjct: 87  ELQRCIRKRKM---VGS-RMFADDLHNLNKRIRYLYKHFNRHGK 126


>BC000191-1|AAH00191.1|  128|Homo sapiens mitochondrial ribosomal
           protein L51 protein.
          Length = 128

 Score = 60.5 bits (140), Expect = 5e-09
 Identities = 37/104 (35%), Positives = 55/104 (52%)
 Frame = +1

Query: 253 LPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSGH 432
           +PR  G  L +P  +  + W+ ++A+FG  D I ILG    HP K L   P W+RG  G+
Sbjct: 28  VPRLIGIRLTLPPPKVVDRWNEKRAMFGVYDNIGILGNFEKHP-KELIRGPIWLRGWKGN 86

Query: 433 EYHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRKTK 564
           E    +RK+KM    G+ R+       + KR+ +LY+  NR  K
Sbjct: 87  ELQRCIRKRKM---VGS-RMFADDLHNLNKRIRYLYKHFNRHGK 126


>AF212248-1|AAK14931.1|  128|Homo sapiens CDA09 protein.
          Length = 128

 Score = 60.5 bits (140), Expect = 5e-09
 Identities = 37/104 (35%), Positives = 55/104 (52%)
 Frame = +1

Query: 253 LPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSGH 432
           +PR  G  L +P  +  + W+ ++A+FG  D I ILG    HP K L   P W+RG  G+
Sbjct: 28  VPRLIGIRLTLPPPKVVDRWNEKRAMFGVYDNIGILGNFEKHP-KELIRGPIWLRGWKGN 86

Query: 433 EYHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRKTK 564
           E    +RK+KM    G+ R+       + KR+ +LY+  NR  K
Sbjct: 87  ELQRCIRKRKM---VGS-RMFADDLHNLNKRIRYLYKHFNRHGK 126


>AB049959-1|BAB41012.1|  128|Homo sapiens mitochondrial ribosomal
           protein bMRP64 protein.
          Length = 128

 Score = 60.5 bits (140), Expect = 5e-09
 Identities = 37/104 (35%), Positives = 55/104 (52%)
 Frame = +1

Query: 253 LPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSGH 432
           +PR  G  L +P  +  + W+ ++A+FG  D I ILG    HP K L   P W+RG  G+
Sbjct: 28  VPRLIGIRLTLPPPKVVDRWNEKRAMFGVYDNIGILGNFEKHP-KELIRGPIWLRGWKGN 86

Query: 433 EYHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRKTK 564
           E    +RK+KM    G+ R+       + KR+ +LY+  NR  K
Sbjct: 87  ELQRCIRKRKM---VGS-RMFADDLHNLNKRIRYLYKHFNRHGK 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,525,616
Number of Sequences: 237096
Number of extensions: 1925400
Number of successful extensions: 3253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3244
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)