Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h12f
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68752-5|CAA92984.1|  199|Caenorhabditis elegans Hypothetical pr...    75   4e-14
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF047665-1|AAP13766.1|  499|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z68752-5|CAA92984.1|  199|Caenorhabditis elegans Hypothetical
           protein T12G3.5 protein.
          Length = 199

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
 Frame = +1

Query: 220 GYQEKIWRGGL--LPRSEGKALPI--PEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVK 387
           GY  +  + G+  LPR     +P+  P Y+  + WS   A FGQNDYID+LG G++HP +
Sbjct: 45  GYTFRYHQQGVDPLPRIPDCKVPVARPAYKVRDQWSDEAARFGQNDYIDLLGDGSVHPAQ 104

Query: 388 TLYNIPSWIRGVSGHEYHILLRKKKMWAKTGTPRLR---PTKWKEIQKRLSFLYRKLN 552
             Y+ P+W+RG  G      L K   +      +L+   P +W E++KR+ +L  + N
Sbjct: 105 LQYHTPTWLRGFPGQHKANELIKLIHYRNLYDAKLKQNSPKRWHELRKRIKYLMMQHN 162


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +1

Query: 154 KPTVNVVRTRYHADKKRLVRRYGY----QEKIWRGGLLPRSEGKALPIPEYRPDNPWSVR 321
           K  ++V+ +RY  +K +L  +YGY      + W       S+G    +PE + +  +  R
Sbjct: 164 KKHLHVLPSRYAINKPKLPIKYGYDWLFDREEWEKDEQTFSDGAGFTLPEVKTEVVYEER 223

Query: 322 KALFGQNDYID 354
              F Q   +D
Sbjct: 224 SLKFYQQPVVD 234


>AF047665-1|AAP13766.1|  499|Caenorhabditis elegans Hypothetical
           protein T23E1.2 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 436 YHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRK 546
           Y  LL  + ++ ++ TP +    W ++Q+ LSF+Y+K
Sbjct: 334 YRELLVNRPLFDESNTPGMW---WNDLQEELSFMYKK 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,922
Number of Sequences: 27780
Number of extensions: 313826
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)