Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h11r
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    24   1.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    24   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   9.5  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 726 STYDSIAYLSANQFQYEKKKTD 661
           +T+D     + N F YEK+ TD
Sbjct: 220 TTFDDYLDYAINPFDYEKRSTD 241


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 726 STYDSIAYLSANQFQYEKKKTD 661
           +T+D     + N F YEK+ TD
Sbjct: 220 TTFDDYLDYAINPFDYEKRSTD 241


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 259 NYNIVFQTMSKKNDYKVTSLSLHLVTSQLL 348
           NYN + + +S  ND  V  L L L  SQL+
Sbjct: 31  NYNRLIRPVSNNNDTVVVKLGLRL--SQLI 58


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 188 SIALFI--AVGFFI*LLLCCDKIVFEMCPKVTFNSLLNF 78
           SI L +  ++ F I    CC  I    C  +TF S L F
Sbjct: 52  SITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLF 90


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 411 SIFKMTLMFLVHQII*SCSQIQTAVC*RNCK 503
           S+  +T  F+   +  +C   +TA+C R C+
Sbjct: 13  SVILITSYFVTPVMPCNCKAPETALCARRCQ 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,653
Number of Sequences: 438
Number of extensions: 3730
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)