Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h11f
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    71   5e-14
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   3.0  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   3.9  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    24   6.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   9.1  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    24   9.1  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    24   9.1  

>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 71.3 bits (167), Expect = 5e-14
 Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
 Frame = +1

Query: 67  MGNASAKAVEVKVLEGPAP-ENVEKPKLKPCCACPETKRARDACIIE--NGEENCGPLIE 237
           M +++  +   KV E PAP  + EKPK  PCCACPETK+ARDAC+++  NG   C  LIE
Sbjct: 1   MSSSTEPSTATKVSE-PAPIASEEKPK--PCCACPETKQARDACMLQSSNGPIECAKLIE 57

Query: 238 EHKACMRKMGFNI 276
            HK CM + G+ +
Sbjct: 58  AHKKCMAQYGYEV 70


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 216 LFSIFYNACIACSFCFRASTARL*FRFL 133
           LF   Y + + CS C++ STA   F +L
Sbjct: 431 LFQGMYKSTLECSICYQKSTAFDPFMYL 458


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 371 FHIGTDLLTNKQCCRRYFVANNTLIEN 291
           F +G D+LT + C R   +ANN  + N
Sbjct: 577 FFVG-DILTKRDCLRLQVLANNVNVVN 602


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 261 FSHTGLVFFNKWSTVLF 211
           F++ G  FF+K STVLF
Sbjct: 6   FTNRGSTFFSKLSTVLF 22


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 252 TGLVFFNKWSTVLFSIFYNACIACSFCF 169
           TG+ FF    +   S+F+     CSF F
Sbjct: 2   TGMFFFASLFSSFESLFFRLFFVCSFFF 29


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 300 D*KFSMTLNIESHFSHTGLVFFNKWSTVL 214
           D +F+  +N ES    T L+F+NKW  +L
Sbjct: 48  DSEFNYIVN-ESQNVSTRLIFWNKWIYIL 75


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 139 PKLKPCCACPETKRARDACIIENGEENCGPLIEEHKACMRKMGFNI 276
           PKLKP    PE     +  +++NG   C  +++  + C +   FNI
Sbjct: 744 PKLKPGAPIPEEYLVENLDLVKNG---CSNMVKHIQNCHK---FNI 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,653
Number of Sequences: 5004
Number of extensions: 26375
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)