Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h11f
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   0.90 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.6  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 131 TFSGAGPSKTLTSTALALA 75
           TF G GPSK L   A + A
Sbjct: 192 TFEGTGPSKKLAKAAASKA 210


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 218 FSSPFSIMHASRAL 177
           FS  F I+HA RAL
Sbjct: 192 FSESFQILHAGRAL 205


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 218 FSSPFSIMHASRAL 177
           FS  F I+HA RAL
Sbjct: 192 FSESFQILHAGRAL 205


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 218 FSSPFSIMHASRAL 177
           FS  F I+HA RAL
Sbjct: 192 FSESFQILHAGRAL 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,502
Number of Sequences: 438
Number of extensions: 1680
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)