Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h10r
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   223   1e-58
AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...   202   2e-52
AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical ...    99   3e-21
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    29   3.5  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   6.0  
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    28   8.0  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  223 bits (545), Expect = 1e-58
 Identities = 105/172 (61%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
 Frame = -3

Query: 722 VEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGKEDPGVV 546
           +E KHGIHCN+TLLF+  QA+ACAE+ VTLISPFVGRI+DW+V++T +K Y  K+DPGVV
Sbjct: 145 LESKHGIHCNMTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVV 204

Query: 545 SVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXX 366
           SVT+I+NYYKK+ YKTQVM ASFRNT EI+ L GCDLLTISP LL++LA+          
Sbjct: 205 SVTRIFNYYKKYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETELAPVVLS 264

Query: 365 XXXXXLNDIEKISLTESEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIK 210
                  D+ K+S+ E  FRW LNED MAT+KL++GIR FA D R LE LI+
Sbjct: 265 TSHAKTLDLPKVSIDEKAFRWALNEDAMATEKLAEGIRNFAKDARTLEKLIE 316


>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score =  202 bits (493), Expect = 2e-52
 Identities = 97/162 (59%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
 Frame = -3

Query: 692 LTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGKEDPGVVSVTKIYNYYK 516
           +TLLF+  QA+ACAE+ VTLISPFVGRI+DW+V++T +K Y  K+DPGVVSVT+I+NYYK
Sbjct: 1   MTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYK 60

Query: 515 KFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXLNDIE 336
           K+ YKTQVM ASFRNT EI+ L GCDLLTISP LL++LA+                 D+ 
Sbjct: 61  KYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETELAPVVLSTSHAKTLDLP 120

Query: 335 KISLTESEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIK 210
           K+S+ E  FRW LNED MAT+KL++GIR FA D R LE LI+
Sbjct: 121 KVSIDEKAFRWALNEDAMATEKLAEGIRNFAKDARTLEKLIE 162


>AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical
           protein Y73B3A.2 protein.
          Length = 97

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 49/94 (52%), Positives = 61/94 (64%)
 Frame = -3

Query: 491 MGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXLNDIEKISLTESE 312
           M ASFRNT EI+ L GCDLLTISP LL++LA+                 D+ K+S+ E  
Sbjct: 1   MAASFRNTEEIKGLVGCDLLTISPALLKQLAAETEFAPVVLSTSHAKTLDLPKVSIDEKA 60

Query: 311 FRWHLNEDHMATDKLSDGIRRFAADTRKLESLIK 210
           FRW LN+D MAT+KL++GIR FA D R LE LI+
Sbjct: 61  FRWALNDDAMATEKLAEGIRNFAKDARTLEKLIE 94


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
            protein C48E7.6 protein.
          Length = 1764

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 347  NDIEKISLTESEFRWHLNEDHMATDKLSDGI 255
            N+  ++S TE    +HL   H ATD LSD +
Sbjct: 1209 NERNRVSWTELRTSFHLLYKHTATDSLSDSL 1239


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 26/82 (31%), Positives = 37/82 (45%)
 Frame = +1

Query: 403  NSCSNLGLIVSKSQPANSRISPVLRKDAPITWVL*PNFL**L*IFVTETTPGSSLPS*VF 582
            ++ S L  IVS   P  S +SP++   +PI   L P  +  L    T  TP +     V 
Sbjct: 2062 STVSTLSPIVSTLSPIVSTLSPIVSTLSPIVSTLSPT-VSTLSSNATSLTPSNP----VL 2116

Query: 583  FVCSTYQSNIRPTNGDISVTFA 648
               +T QS    T G  S+TF+
Sbjct: 2117 VSTATTQSPATTTKGSSSITFS 2138


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +1

Query: 289 SSLRCQRNSDSVSDI-----FSMSFKAANFGSRTFFSGLSLLANSCSNLGLIVSKSQPAN 453
           SS R QR+  SV +      + +   A + G+R F   L  L+   +N+  ++ +S+P  
Sbjct: 5   SSERVQRSVRSVVETKNNIKYGVICDAGSSGTRLFVYTLKPLSGGLTNIDTLIHESEPVV 64

Query: 454 SRISPVL 474
            +++P L
Sbjct: 65  KKVTPGL 71


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 426 DCQQITAG*FTYFPGITERCTHYLGLVTKLLVIVVNFCHG-NYSGVFLALISLLCMF 593
           DC          FP I      +LG +T LL  ++NF      S VF + +S+  +F
Sbjct: 567 DCYDFYNANSLIFPAIVSSLETFLGSITFLLDPIINFSFDKRISKVFSSQVSMFSIF 623


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,689
Number of Sequences: 27780
Number of extensions: 327080
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)