Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h10f
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   199   3e-52
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   1.1  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   1.8  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.4  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   3.2  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   4.3  
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    26   4.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   4.3  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   5.6  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   5.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.6  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   7.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   7.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   7.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.9  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  199 bits (486), Expect = 3e-52
 Identities = 101/171 (59%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
 Frame = +3

Query: 159 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 335
           MS+L+QLK   TVV +DTGDFE++ +YKP DATTNPSLIL+A+   QY  ++D A+ Y K
Sbjct: 1   MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60

Query: 336 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFA 515
             G SI  Q+    D L + FG +IL I+PGRVS EVDAR SFD   +I KA   I L+ 
Sbjct: 61  AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120

Query: 516 EHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEA 668
             GI +ER+LIK+AST+EGIQAAK+LE++ GIHCNLTLLFS  QA+ACAEA
Sbjct: 121 AEGIGRERVLIKIASTYEGIQAAKQLEEE-GIHCNLTLLFSFVQAVACAEA 170


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 526 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSME 347
           +P S NK+ +   F  +     +N    S+ ++   I N S P   +S + +SAT  S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207

Query: 346 LPL 338
           +P+
Sbjct: 208 IPI 210


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +1

Query: 493 LNLSIYLLNMVLKKKEF*LNWPPLGKEFKQPKSWRRSMESIV 618
           L+ SI  + +  ++ +F L+  P+ ++FK  +S+RR ++S++
Sbjct: 362 LDTSISQIRVTHEQAKFLLSVIPVNQDFKALQSYRRILDSVI 403


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 535 SFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLS 383
           S LIP   +K    +A    +SL ++NLA+ +  T    IF+++ PK   S
Sbjct: 159 SILIPTFVSKFNEFLALD--SSLRDNNLATVAVITTDKAIFSLNVPKKKRS 207


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 120 VSMSGEPD-TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 296
           VS S  PD TKR   S L ++K    +       ++ K+ KP+   T+  + L+ A M  
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199

Query: 297 YQHI 308
           YQ +
Sbjct: 200 YQDV 203


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 192 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 371
           T +AD  +     + +  D  T   L+L + G+E Y    D A      N  S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330

Query: 372 TLDMLS 389
            L++ S
Sbjct: 331 FLNLPS 336


>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 81  YQVYYHNQCNISLVSMSGEP--DTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTD 248
           YQV+      + L S +G+   D    K SAL ++++ +    D   + A+K+ KP D
Sbjct: 36  YQVFREAGYEVQLTSETGKCKFDDHSIKKSALGEVERDAFDNKDNEFWYALKDIKPAD 93


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 507 LFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 623
           L   +G K   I++  + T + IQ    L +KH IHC+L
Sbjct: 788 LIKSNGFKGLPIVVIKSITRQLIQCLTLLNEKHVIHCDL 826


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 407 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 318
           FTPK +    ++++   FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 495 KFINLFAEHGIKKERI-LIKLASTWEGIQAA 584
           + ++LF+ HG++KE + L+  AS +  IQ A
Sbjct: 216 RILSLFSFHGVRKESLELLWRASKYPNIQGA 246


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 601 FFSNSLAA*IPSQVEANLIKILSFLIPCSANKLI 500
           FF+ SLA  IP  V  + +   + LIP  A K++
Sbjct: 885 FFAQSLATPIPEPVPVDNMPTFTVLIPHYAEKIL 918


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 528 KKERILIKLASTWEGIQAAKEL 593
           +K+ I +   + WEG+Q AKEL
Sbjct: 299 EKKTITLHNGNQWEGLQMAKEL 320


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 16  RLFNQSRFLINNINVIYQIRENIKFI 93
           R    S FL+N  NV + +RE + F+
Sbjct: 392 RALELSTFLVNEANVRFMVRELLSFL 417


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 421 IIFNISHPKSTLSISKVSATCSSMELPLSF 332
           II N+   KS L+  KV A CS +   LSF
Sbjct: 596 IIQNVEKLKSYLNSFKVQAECSEISKILSF 625


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = +3

Query: 168  LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK---- 335
            LDQLK H T+V   GD          + + +P     A   E +   L KA++ G     
Sbjct: 1979 LDQLKIHETLVHSLGDIHEKARKLLAEFSASP-----AGRFEWFDGYLLKAVEEGHWFVL 2033

Query: 336  DNGSSIEEQVAETLDML 386
            DN +     V + L+ L
Sbjct: 2034 DNANLCSPAVLDRLNSL 2050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,021
Number of Sequences: 5004
Number of extensions: 60478
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)