Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h10f
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 112 3e-25
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040... 38 0.010
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 31 0.83
08_02_0459 + 17420156-17420976,17422291-17424199 29 3.3
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048... 29 4.4
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 28 5.9
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 112 bits (269), Expect = 3e-25
Identities = 59/173 (34%), Positives = 105/173 (60%), Gaps = 3/173 (1%)
Frame = +3
Query: 159 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYG 332
++ LD + S +V DT F+ +++ PT AT + SL+L AG+ +++ +D A+ G
Sbjct: 63 VTELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADG 122
Query: 333 KDNG-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINL 509
+ N E++++ L G E+ ++PGRVS E+DARL++D I + + + L
Sbjct: 123 ECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKL 182
Query: 510 FAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEA 668
+++H + ER+L K+ +TW+GI+A++ LE + GI +LT ++S QA A A+A
Sbjct: 183 YSDHDVLSERLLFKIPATWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQA 234
>01_07_0031 -
40603243-40603491,40603617-40603799,40603896-40604084,
40604244-40604916,40605583-40605737
Length = 482
Score = 37.5 bits (83), Expect = 0.010
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Frame = +3
Query: 297 YQHILDKAIKYGKDNGSSIEEQVAETLDMLSVLFG--CEILKIIPGRVSVEVDARLSFDK 470
Y + I GKD S+ E V + + LF + G VSVEV RL+ D
Sbjct: 171 YDDQFKQLILAGKDAESAYWELVIKDIQDACKLFEPIYDQTDGADGYVSVEVSPRLANDT 230
Query: 471 DASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSL--Y 644
++ +A K+++ + + + IK+ +T E + + KE+ +GI N+TL+FS+ Y
Sbjct: 231 QGTV-EAAKWLHKVVD----RPNVYIKIPATAECVPSIKEVIA-NGISVNVTLIFSIARY 284
Query: 645 QAI 653
+A+
Sbjct: 285 EAV 287
>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 511 NKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHP 398
N +++++AF +A S+ N+ STS G + +I+ P
Sbjct: 897 NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934
>08_02_0459 + 17420156-17420976,17422291-17424199
Length = 909
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 81 YQVYYHNQCNIS---LVSMSGEPDTKRTKMSALDQLKQHSTVVADTGD 215
YQVY + N S VS+S PD R + L ++ Q V + GD
Sbjct: 211 YQVYQQLKGNFSCSVFVSVSRNPDMMRILRTILSEVTQRDYAVTEAGD 258
>04_04_1498 +
34002677-34003104,34004427-34004532,34004643-34004811,
34004901-34005088,34005644-34005763
Length = 336
Score = 28.7 bits (61), Expect = 4.4
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Frame = +3
Query: 105 CNISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATT-------NP 263
CN L + G T KM+ L L +H T + K++KP++ T P
Sbjct: 203 CNDELRVVFGTDTTDMFKMNKL--LAKHITPLDPKDQIREAKKFKPSNVATQPMPLINQP 260
Query: 264 SLILSAA-----GMEQYQHILDKAIKYGKD--NGSSIEEQVAETL---DMLSVLFGCE 407
S+++S A GME D A++Y D + +E+ + ++ L LFGCE
Sbjct: 261 SVVISDALAKFIGMEGTVP-QDDALRYLWDYIKANQLEDAITGSILCDSKLQELFGCE 317
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +3
Query: 129 SGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHI 308
S EP ++T + A DQ K T+V G A K T +L + M ++
Sbjct: 3142 SAEPTKRKTVVGASDQAKASETIVDREGMMTAPYREKSLCPDTQHAL-RNVLEMSPSDNL 3200
Query: 309 LDKAIKYGKDNGSSIEEQVAETLDMLS 389
D G+++GS E ++ D ++
Sbjct: 3201 TDNPFA-GQEHGSFSEGSTTDSRDAIT 3226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,140
Number of Sequences: 37544
Number of extensions: 335018
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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