Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h10f
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   222   2e-58
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    31   0.56 
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical...    28   6.9  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    28   6.9  
AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  222 bits (542), Expect = 2e-58
 Identities = 107/170 (62%), Positives = 134/170 (78%)
 Frame = +3

Query: 159 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKD 338
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K+
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKE 60

Query: 339 NGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 518
           + S  +E +   +D L V+FG EILK IPGRVS EVDARLSFD  ASI +A+  I  + +
Sbjct: 61  HASGHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEK 120

Query: 519 HGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEA 668
            GI K+RILIKLASTWEGI+AAK LE KHGIHCN+TLLF+  QA+ACAE+
Sbjct: 121 EGISKDRILIKLASTWEGIRAAKFLESKHGIHCNMTLLFNFEQAVACAES 170


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +3

Query: 336 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSV-EVDARLSFDKDASIAKAIKFINLF 512
           D  S++ E++ E    ++++      +    +V + E  A+L+ +KD  I K  + I L 
Sbjct: 218 DPSSTMNEELTELRSQMNLIIEYNEKQETVWQVKLSEASAQLN-EKDLVIEKITRKIELL 276

Query: 513 AEHGIKKERILIKLASTWEGIQAAKELEK 599
            E+ +KK++ + +L   +E     K L+K
Sbjct: 277 QENNVKKDQRIYELEQCFESEDYCKILQK 305


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 19  LFNQSRFLINNINVIYQIRENIKFI 93
           LF Q  F + ++  IYQI EN+K I
Sbjct: 219 LFRQRSFKLTSLTEIYQISENVKSI 243


>U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical
           protein T25G12.5 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 219 EAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDN---GSSIEEQVAETLDMLS 389
           E  K    T   T P++   A G+      LD A +Y  +    G+ I      +  +  
Sbjct: 255 EGFKVAMKTFDKTRPTVAALATGVAY--RCLDVATQYSLERKAFGTQIANHQGVSFLLAE 312

Query: 390 VLFGCEILKIIPGRVSVEVDARLSFDKDASIAK 488
           +   CE+ +++  +   EVDA       ASIAK
Sbjct: 313 MAINCELARLMTYKSGAEVDAGRPGSYYASIAK 345


>AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical
           protein Y38E10A.17 protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 99  NQCNISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMK--EYKPTDATTNPSLI 272
           N  +++  +++ + D K       D +      VAD G    MK  E KP D  T   +I
Sbjct: 223 NAQDVAKAAVADKVDQKVVDAIGKDMVVAVQVDVADNG-MPVMKVLEGKPKDKETPVGII 281

Query: 273 LSAAGMEQYQHILDKAIKYGKD 338
           + A    Q+  I+ + +  GKD
Sbjct: 282 VKANDQVQFVQIVGRELGGGKD 303


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +3

Query: 108 NISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTD--ATTNPSLILSA 281
           NIS+  +   P TKRT+++  D+ K   T V  T       E    D  + T   L L  
Sbjct: 196 NISVDVIKLAPTTKRTRVTVPDRPKLMETTVPVTSSSSTSSEMIEVDGESETQEDLTLGG 255

Query: 282 AGME 293
            G E
Sbjct: 256 GGAE 259


>AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical
           protein F56C3.8 protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 532 FLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNI 407
           F++    N ++ LI      SL +D L   +TD +PG++  +
Sbjct: 5   FIVTKMKNTVLLLILALFFISLRDDGLQMPNTDLKPGLLMQM 46


>Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical
           protein T09E11.6 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 395 KHTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFH 288
           +H Q + SF+HL FN   +I S  NS ++    L H
Sbjct: 413 EHFQAVASFTHLMFN--KVIPSFDNSIVECTAELLH 446


>Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical
           protein T12A7.1 protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 240 PTDATTNPSLILSAAG-MEQYQHILDKAIKYGKDNGSSIEEQVA-ETLDMLSVLFGCEIL 413
           P D     S ++   G M  Y+H L     YG  N S I  +VA +   M+      +IL
Sbjct: 401 PLDLNRQSSSVVGINGVMNAYRHALQNVTLYGPTNFSPIIVEVANKAQKMMKTTARYQIL 460

Query: 414 KIIPGRVSVEVDARLSFDKDAS 479
            II   +  ++ A ++   +AS
Sbjct: 461 LIITDGIISDMYATINTVINAS 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,975
Number of Sequences: 27780
Number of extensions: 322557
Number of successful extensions: 958
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)