Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h08r
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   7.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 496 LHYSFKFVIIFRLPIIHIIYYSN 428
           LHY+  ++    +P+   +YY N
Sbjct: 334 LHYNINYIEQIPVPVPFPVYYGN 356


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 378 KQSNSTTEYVNG*DNVLLE*YIIWIIGSRNMIT 476
           +Q+ +    +N  DNV++    +W IG+    T
Sbjct: 144 RQTKAIANKINSWDNVVVAYEPVWAIGTGKTAT 176


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 95  IDRYFLKFLPTRYWDV 48
           +DRY+    P + WDV
Sbjct: 134 MDRYYAVIKPLQLWDV 149


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 291  YSPVNEYR*TVT*N*IILRRR 229
            Y P+NE+  T+  N + ++RR
Sbjct: 1536 YRPINEFHWTLVSNSVKMQRR 1556


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 291  YSPVNEYR*TVT*N*IILRRR 229
            Y P+NE+  T+  N + ++RR
Sbjct: 1532 YRPINEFHWTLVSNSVKMQRR 1552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,737
Number of Sequences: 438
Number of extensions: 4933
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)