Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h08f
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    29   0.67 
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    28   1.2  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   4.7  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   4.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   6.2  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   6.2  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.2  

>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 325 EERLAALPIGQETWFESDATPRWQSSEV--DDVSAAFLDNL 441
           E  +AA P+G+ TW   D  P+WQ  +   + V A + D +
Sbjct: 372 ERAIAAAPLGEMTWARMD-YPKWQDIKAFHEGVRAVYPDRM 411


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 196 APKIQ-YYYDAPAVNVPEMHDQVQYPYYYDPSAQYLQ 303
           A K Q Y++DAP + VP     V+  Y  +P   YL+
Sbjct: 234 AKKFQKYFFDAPLLAVPGRTYPVEIYYTQEPERDYLE 270


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/67 (22%), Positives = 27/67 (40%)
 Frame = +1

Query: 97  ISYLIVQVKTYPMQGWPLWGQVPREYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQYPYY 276
           + Y I Q++ +  +   LW Q   +Y    Y+Y+  +   Y+A      + +D    P Y
Sbjct: 335 LDYAIFQLEEWRKEWCHLWEQPEPQYSRIAYFYSYNV--VYEASIQTATDGNDFANIPRY 392

Query: 277 YDPSAQY 297
                 Y
Sbjct: 393 VSMVQSY 399


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 511 DYEDKDLEDEEVRELKALAGNPCIMN 588
           D+    L D+E RE++ALA +P I N
Sbjct: 461 DFSLSRLTDDEEREIRALAKSPDIHN 486


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 280 DPSAQYLQNEAPQRHEERLAALPIGQETWFESDATPRWQSSEVDDVS 420
           +PS   +    P+   +  A LPIG ++  +SD T    S+  +  S
Sbjct: 276 NPSTTKITYNPPKLPMKDFATLPIGYQSTCDSDETSELSSTSSEQTS 322


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 259 VQYPYYYDPSAQYLQNEAPQRHEERL 336
           +QY   + P   +L   A + HEER+
Sbjct: 26  IQYSDEFSPDEDWLNEHAAKEHEERI 51


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -1

Query: 297 ILSTWVVIIGVLDLVVHLRNIYSGSIVVILYLRSVVIFIIGVLPRYL 157
           ILST + +  V+   V L+   +  +   L +R+VVIFI+ ++  +L
Sbjct: 30  ILSTILYVSAVISWNVSLKVFGNVLLPGFLTIRTVVIFILRIVSLFL 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,559
Number of Sequences: 5004
Number of extensions: 42477
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)