Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h08f
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 34 0.097
08_02_0186 + 13965960-13966424 32 0.30
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 31 0.52
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678... 30 1.6
09_06_0040 - 20432008-20432091,20432152-20432229,20432322-204329... 29 2.7
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 29 2.7
11_01_0637 + 5104904-5105131,5105222-5105309,5105483-5106288 29 3.6
08_02_1449 - 27174451-27178005 28 4.8
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 28 4.8
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 4.8
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099... 28 6.3
11_05_0037 - 18518414-18519078,18519203-18519254 27 8.4
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461... 27 8.4
09_06_0143 - 21122872-21123154,21124112-21124173 27 8.4
01_05_0269 + 20258338-20258536,20258570-20258727,20258777-202588... 27 8.4
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 33.9 bits (74), Expect = 0.097
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 175 PDDEYYYAPKIQYYYDAPAVNVPEMHDQVQYPYYYDP 285
P EYY P YYD P + P+ +D P YYDP
Sbjct: 49 PSPEYYDPPPSPDYYDPP--HSPDYYDPPPSPDYYDP 83
>08_02_0186 + 13965960-13966424
Length = 154
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 175 PDDEYYYAPKIQY--YYDAPAVNVPEMHDQVQYPYYYDPSAQYL 300
P YYYAP Y YY+ A + P + YYY A YL
Sbjct: 105 PQQPYYYAPPAGYVPYYNNSAASPPVLLAHAAVGYYYYVMAAYL 148
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 166 REYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQYPYYYDPSAQYLQNEAPQRH 324
REY D+E + Q +Y+ A+ P+M + V +P YD + + +EA +R+
Sbjct: 386 REYSDEEMDSDEEQQRFYNFTAI--PKMCNMVIFPTRYDAQLEEMLDEAYERY 436
>09_06_0177 +
21365314-21366100,21367451-21367578,21367715-21367870,
21368006-21368196,21369392-21369434,21369537-21369627,
21369859-21369935,21370278-21370366,21370474-21370657,
21370885-21371138,21371465-21371567,21371646-21371977,
21372060-21372504
Length = 959
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 478 RENARAAFLPVDYEDKDLEDEEVREL 555
R N + A +P DYED+DL ++E +L
Sbjct: 252 RSNGQDASVPRDYEDEDLSEDEDEDL 277
>09_06_0040 -
20432008-20432091,20432152-20432229,20432322-20432941,
20433042-20433108,20433276-20433291,20433781-20433887,
20433989-20434037,20435059-20435142,20435288-20435384,
20435914-20435985,20436075-20436435,20437864-20438259
Length = 676
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 391 WQSSEVDDVSAAFL---DNLILTQMAQDAQRRRENARAAFLPVDYED--KDLEDEEVREL 555
W SS V + L +N L + + A+RR E ARAA ++ ++ L EEVR L
Sbjct: 67 WLSSAVGEKVDELLLREENRALVEGVEAAERRVERARAALADIERQEAAARLASEEVRRL 126
Query: 556 K 558
+
Sbjct: 127 E 127
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Frame = +1
Query: 298 LQNEAPQRHEERLAALPIGQETWFESDATPRW-------QSSEVDDVSAAFLDNLILTQM 456
L+NE + H+E L ++ I +E W +P+ SSEV +V + +L Q
Sbjct: 463 LENEKAKYHQEYLDSIKILEEKWKIHQQSPKKLIKETEPTSSEVGEVQNLLQNEKVLRQS 522
Query: 457 AQDAQRRREN 486
A+D +N
Sbjct: 523 AEDEANDLKN 532
>11_01_0637 + 5104904-5105131,5105222-5105309,5105483-5106288
Length = 373
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 127 YPMQGWPLWGQVPREYPDDEYYYAPKIQYYYDAPAVNV 240
YP+ L G + D+YYYAPK DA A+ +
Sbjct: 228 YPLTAGMLHGTLYWYLKGDQYYYAPKCATTADAHAITL 265
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 358 ETWFESDATPRWQSSEVDDVSAAFLDNL 441
E W D P WQS ++ +S + LDNL
Sbjct: 797 ECWRCKDLPPLWQSVSLESLSLSRLDNL 824
>03_06_0769 + 36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 28.3 bits (60), Expect = 4.8
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Frame = +1
Query: 208 QYYYDAPAVNVPEMHDQVQYPYYYDPSAQY---LQNEAPQRHEERLA---ALPI-GQETW 366
Q +Y+ P +PE + Y YDP+ Y +Q + E+ A +L + G+
Sbjct: 690 QLFYE-PDELMPE-REYEDVTYGYDPAMDYDSQMQIQPAIMVEDANADDVSLGVEGEVKK 747
Query: 367 FESDATPRWQS--SEVDDVSAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDKDLEDE 540
E D R Q + D SA L + T++ DAQ+R +N RA + K+ E+E
Sbjct: 748 LEKDKKLRLQECLDKKKDASARRLPSS-KTRLT-DAQKRAQNLRAYKADLQKAKKEQEEE 805
Query: 541 EVRELKAL 564
+++ L+ L
Sbjct: 806 QIKRLERL 813
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 471 LCVLSHLREYQIVKESCTDIINFT*LPAGCS 379
+C +SH +Q+++++ +I PAGCS
Sbjct: 128 ICFVSHSPSFQVLRDALEEIFVLCFSPAGCS 158
>08_02_0021 +
11307795-11308093,11308454-11308556,11309623-11309931,
11310190-11310618
Length = 379
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 347 LLVKKLGSKAMLHPAGSQVKLMMSVQLSLTI*YSRRWLKTHR 472
L+ K + L P GS+++ + +SLT+ Y+ WL + R
Sbjct: 45 LMTSKAKKRRCLDPEGSKIQRPVVSSISLTLSYTLPWLASLR 86
>11_05_0037 - 18518414-18519078,18519203-18519254
Length = 238
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 319 RHEERLAALPIGQETWFESDATPRWQSSEVDDVSAA 426
+H + +A L F SDA P W+ +VD +AA
Sbjct: 196 KHPDAIAVLEQRVVGRFFSDAVPHWEPLKVDGAAAA 231
>11_03_0146 +
10744403-10744603,10745199-10745834,10745967-10746125,
10746398-10747036,10748018-10748151,10748281-10748464,
10748882-10749217,10751659-10751945,10752863-10753253,
10753351-10753615,10753740-10753818,10754123-10754543
Length = 1243
Score = 27.5 bits (58), Expect = 8.4
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 268 PYYYDPSAQYLQNEAPQRHEERLAALPIGQETWFESDATPRWQSSEVDDVSA--AFLDNL 441
P+ P L++ A + + +AL I ++ D S +D + A A L
Sbjct: 327 PFGNLPRLGLLESLAEYDRQAKESALEIERQFRLVVDKQHMLCQSVIDVLQANRAAQPPL 386
Query: 442 ILTQMAQDAQRRRENARAAFLPVDYEDKDLEDEEVRELKALAGNP 576
++ Q AQ + R + F D D ED++ ++ G+P
Sbjct: 387 VVPQAAQCQEASRRQSDVQFTSADINPNDSEDQQQQQHHGCNGSP 431
>09_06_0143 - 21122872-21123154,21124112-21124173
Length = 114
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 190 YYAPKIQYYYDAPAVNVPEMHDQVQYPYYYDPSAQYLQNEAPQR 321
YY +Y+ +A + P+ ++ YY AQ+ Q + P +
Sbjct: 55 YYNQSYEYFKEAGRIIKPDFGNEYSKKSYYRSLAQWFQKKEPSQ 98
>01_05_0269 +
20258338-20258536,20258570-20258727,20258777-20258899,
20259176-20259310,20259380-20259479,20259572-20259945,
20259994-20260143
Length = 412
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 517 EDKDLEDEEVRELKALAG 570
ED+DL DE++R+L+ +AG
Sbjct: 361 EDQDLMDEDLRQLEVIAG 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,983,960
Number of Sequences: 37544
Number of extensions: 278532
Number of successful extensions: 543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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