Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h08f
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z50874-4|CAD91698.1| 150|Caenorhabditis elegans Hypothetical pr... 30 1.1
U64848-15|AAB04891.1| 384|Caenorhabditis elegans Hypothetical p... 30 1.4
AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical... 30 1.4
Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical pr... 29 3.2
U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical pr... 29 3.2
AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protei... 29 3.2
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 28 4.3
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 28 4.3
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 28 4.3
AF026208-2|AAB71269.3| 774|Caenorhabditis elegans Prion-like-(q... 28 5.7
AF003142-8|AAB54185.2| 205|Caenorhabditis elegans Hypothetical ... 28 5.7
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 27 7.5
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 9.9
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 27 9.9
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 27 9.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.9
>Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical
protein R01E6.5 protein.
Length = 245
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 169 EYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQY-PYYYDPSAQY 297
+Y D+E Y YY+ N + HD Y P YY P +Y
Sbjct: 171 KYDDNEGKYGDHTDGYYNKGYDNYGQGHDSESYQPSYYQPKPKY 214
>Z50874-4|CAD91698.1| 150|Caenorhabditis elegans Hypothetical
protein R10E4.2c protein.
Length = 150
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +1
Query: 136 QGWPLWGQVPREYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQYP-----YY-YDPSAQY 297
Q P GQ P++ + + Q + ++N PEM ++QYP YY Y P+A Y
Sbjct: 13 QQQPQQGQAPQQQQQGPPQHQYQQQRPFHGHSMNNPEMLQRMQYPQVYQSYYGYHPAAVY 72
Query: 298 LQNEAPQRHEERLAALPIG 354
Q+ ++ + +G
Sbjct: 73 QQHYDVNSLASQMGGMHVG 91
>U64848-15|AAB04891.1| 384|Caenorhabditis elegans Hypothetical
protein C50E3.13 protein.
Length = 384
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 433 DNLILTQMAQDAQRRRENARAAFLPVDYEDKDLEDEEVRELKAL 564
+ L+ T+ + RRRE A P + ED D EDE+ + L
Sbjct: 233 ERLVATRQRTEEDRRRERASNRAGPSNQEDYDSEDEDEHHVDEL 276
>AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical
protein Y71H2AM.24 protein.
Length = 322
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -1
Query: 255 VVHLRNIYSGSIVVILYLRSVVIFIIGVLPRYLSPQRPSLHWVCLNLHYQVA 100
+VH+RNI + +++ + RS++I + Y++ Q+ +H NLH VA
Sbjct: 205 IVHIRNIKNSTLIFLRCDRSLLIHDCDNVHIYVAAQQVRIH-TSQNLHLHVA 255
>Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical
protein T11F9.5 protein.
Length = 265
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 112 VQVKTYPMQGWPL---WGQVPREYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQYPYYYD 282
+Q K Y Q W + +G + +Y D + Y PK Y+ +P D + YY
Sbjct: 174 MQYKKYLDQWWIVPYDYGSI-MQYHDSDNEYGPKNSKYFRTMGSQIPSYFDYLMINEYYQ 232
Query: 283 PSAQ 294
S +
Sbjct: 233 CSCE 236
>U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical
protein T10E9.2 protein.
Length = 720
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 355 QETWFESDATPRWQSSEVDDVSAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDKDLE 534
++TW ES + S E + F NL+L +D RRE +++ L V K +
Sbjct: 585 KDTWNESSCSSSSSSDESNSEDDRFERNLLLEATTKD--ERRERSKSTELKVKDLSK-MR 641
Query: 535 DEEVRE 552
EVRE
Sbjct: 642 PAEVRE 647
>AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protein
protein.
Length = 82
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 112 VQVKTYPMQGWPL---WGQVPREYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQYPYYYD 282
+Q K Y Q W + +G + +Y D + Y PK Y+ +P D + YY
Sbjct: 18 MQYKKYLDQWWIVPYDYGSI-MQYHDSDNEYGPKNSKYFRTMGSQIPSYFDYLMINEYYQ 76
Query: 283 PSAQ 294
S +
Sbjct: 77 CSCE 80
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 175 PDDEYYYAPKIQYYYDAPAVNVPE-MHDQVQYPYYYDPSAQ 294
PD+ Y PK Y P V PE M V Y Y +P A+
Sbjct: 429 PDEPSTYTPKPIAYEPEPMVYKPEAMKPAVSYDAYEEPPAE 469
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 418 SAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDKDLEDEEVRE 552
S DN+I+T ++A+ V+ E K+ DEE R+
Sbjct: 318 SGTIFDNIIITDSVEEAEAHAAETFDKLKTVEKEKKEKADEETRK 362
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 418 SAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDKDLEDEEVRE 552
S DN+I+T ++A+ V+ E K+ DEE R+
Sbjct: 318 SGTIFDNIIITDSVEEAEAHAAETFDKLKTVEKEKKEKADEETRK 362
>AF026208-2|AAB71269.3| 774|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 40
protein.
Length = 774
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = +1
Query: 103 YLIVQVKTYPMQGWPLWGQVPREYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQYPYYYD 282
+ Q Y Q WGQ +Y + +Y P Y+ P+ + Q QY Y
Sbjct: 448 FYYTQAPFYGQQTQNYWGQQNNQY-NQQYGLPP----YHQPQQTQQPQGYQQQQYGYSTP 502
Query: 283 PSAQYLQNEAPQRHE 327
Q Q + PQ+ +
Sbjct: 503 FPVQQPQPQQPQQQQ 517
>AF003142-8|AAB54185.2| 205|Caenorhabditis elegans Hypothetical
protein F57C9.2 protein.
Length = 205
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 134 CKDGLCGDKYLGSTPMMNITTLLRYNITT 220
CKDG C + + G P+ IT + + IT+
Sbjct: 120 CKDGECQNDFPGDCPINGITDITKPTITS 148
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 189 LLRS*DTILLRCSRCKCS*DARPSPIPLLLRPKCSIFTKRSTSK---A*RASGCLTYWSR 359
++ S D +LL + S + PS IP L +C + RS + A GC ++ R
Sbjct: 10 MVTSEDALLLPSTATPSS--SSPSSIPKCLTERCKVCEDRSNNSRYGAPACLGCTVFFRR 67
Query: 360 NLVRKRCY 383
+V K Y
Sbjct: 68 AVVNKMQY 75
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +1
Query: 346 PIGQETWFESDATPRWQSSEVDDVSAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDK 525
P ET + DA + S ++ + LT++++ ++R+E +A
Sbjct: 2523 PFPDETKEKIDALSKTVSQDLKETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTL 2582
Query: 526 DLEDEEVRELKAL 564
D DE+V+E++ L
Sbjct: 2583 DSIDEKVQEVEKL 2595
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +1
Query: 346 PIGQETWFESDATPRWQSSEVDDVSAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDK 525
P ET + DA + S ++ + LT++++ ++R+E +A
Sbjct: 2523 PFPDETKEKIDALSKTVSQDLKETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTL 2582
Query: 526 DLEDEEVRELKAL 564
D DE+V+E++ L
Sbjct: 2583 DSIDEKVQEVEKL 2595
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +1
Query: 346 PIGQETWFESDATPRWQSSEVDDVSAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDK 525
P ET + DA + S ++ + LT++++ ++R+E +A
Sbjct: 337 PFPDETKEKIDALSKTVSQDLKETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTL 396
Query: 526 DLEDEEVRELKAL 564
D DE+V+E++ L
Sbjct: 397 DSIDEKVQEVEKL 409
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 146 LCGDKYLGSTPMMNITTLLR 205
L GD YLG T M N TT+ R
Sbjct: 62 LTGDNYLGVTDMRNSTTVAR 81
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +1
Query: 346 PIGQETWFESDATPRWQSSEVDDVSAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDK 525
P ET + DA + S ++ + LT++++ ++R+E +A
Sbjct: 2523 PFPDETKEKIDALSKTVSQDLKETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTL 2582
Query: 526 DLEDEEVRELKAL 564
D DE+V+E++ L
Sbjct: 2583 DSIDEKVQEVEKL 2595
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +1
Query: 346 PIGQETWFESDATPRWQSSEVDDVSAAFLDNLILTQMAQDAQRRRENARAAFLPVDYEDK 525
P ET + DA + S ++ + LT++++ ++R+E +A
Sbjct: 2523 PFPDETKEKIDALSKTVSQDLKETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTL 2582
Query: 526 DLEDEEVRELKAL 564
D DE+V+E++ L
Sbjct: 2583 DSIDEKVQEVEKL 2595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,035
Number of Sequences: 27780
Number of extensions: 239982
Number of successful extensions: 563
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -