Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h07r
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   2.7  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   3.5  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   6.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   8.1  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +2

Query: 578 NWRDTSDINLRKLDTDRVTRRDPMSG-----TDDEGRGLRKTSSP 697
           N+R  S +  R+   +  ++ DP+S      TDD   GLR  +SP
Sbjct: 327 NYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSP 371


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 83  FFQMCFAFLLLSLIFFNNHNALSVHKDVYYIRKFIIYFSSMFLNHTQ 223
           FFQ   AF LLS+I    ++  S+ K ++ I   II+F     N TQ
Sbjct: 236 FFQNILAFTLLSIISPVAYSIASLIKRIFVIVVSIIWFQQA-TNFTQ 281


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 710 WNPFQVMTFFGDHALHH 660
           WNP  ++  F DH+ HH
Sbjct: 320 WNPLDLLKSFLDHSNHH 336


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 682 SETTPFIICSRHWITPCYPICI-QFS*IYVRSIAPILE 572
           SE T F +   H +  CY +CI +F+   +  +A +LE
Sbjct: 547 SELTKFQLMPFHMVFECYKLCINEFTPFDLEVLALLLE 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,364
Number of Sequences: 5004
Number of extensions: 53049
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)