Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h06f
(463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.81
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 1.4
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 29 1.9
SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3) 29 2.5
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 28 3.3
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 27 5.7
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 27 5.7
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_26402| Best HMM Match : K-box (HMM E-Value=1) 27 7.6
SB_59620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 27 7.6
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 27 7.6
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6) 27 7.6
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 27 10.0
SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = -2
Query: 351 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 172
R R+ SR R +R P R +R P P S R RS +PR R+ SR RR
Sbjct: 223 RSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRS 282
Query: 171 HFH 163
H
Sbjct: 283 RSH 285
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 336 SRDIRTTTEARRPGTARNTRRPKPTELSACCR----ERSETPRHRNKPSRPVWSRRSPHH 169
+RD R T R P ++ R P+P++ R +R P + + RP +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 30.3 bits (65), Expect = 0.81
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +1
Query: 178 TPSRPNR-SRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPP 354
TPS P+ S P T + P+ + TPS APG G P P+ SAP
Sbjct: 466 TPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAP- 524
Query: 355 GGVDRRGCXPRYPGHP 402
G P P P
Sbjct: 525 -GTPSTPSTPSTPSTP 539
>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +3
Query: 138 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 314
++ +S+Y ++++ + ++++Y + P S +A SD FSLC+ GPL
Sbjct: 137 NTRLSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 324 RTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRN-KPSR 199
R+ T R+ T+ N R P P S R S +PR R+ PSR
Sbjct: 543 RSYTSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585
>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
Length = 461
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -2
Query: 342 AVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 172
A+ + T RP + R R P S R +T PSRP + R PH
Sbjct: 4 ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60
>SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3)
Length = 331
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3
Query: 368 RSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQRRPV 219
R P GGA G + PPQRP T+ V + A S +RPV
Sbjct: 14 RPVPRGGA---GGANAPPQRPKVHFWFSTIDVLLVEKLGYVAKSDNKRPV 60
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQR 288
G PG G + R TP GA+ G +G P PG Q R
Sbjct: 118 GIPGLPGKRGDRGTP--GAKGPPGLAGEPGEPGTQGPR 153
>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 336 SRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 175
+RD R T R P ++ R P+P++ ++R P + + RP +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199
>SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 283 VSRCAWAPGLCGGPDVPAHGS 345
++R W+ LCGGPD+ GS
Sbjct: 108 ITRSWWSSRLCGGPDINDDGS 128
>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 319 HHRGPAPRHSEKHSASEADRAER 251
H GP+ RHS H +E++ A+R
Sbjct: 123 HKEGPSSRHSNVHELNESELAKR 145
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 313 CGGPDVPAHGSAPPGGVDRRGCXPRYP 393
C G + P H PP +RGC YP
Sbjct: 835 CPGSEPPPHKPLPPHFSAKRGCPVSYP 861
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 355 RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 251
R +SR H+DH PR S HS D ER
Sbjct: 205 RRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEER 238
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGA 300
G PG G P PP G P G PP PGA
Sbjct: 202 GQPGMWGPPPMGGPPPMGGPP-GGYPPPPPPPGA 234
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -2
Query: 312 EARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 175
E ++P A+ T + S+ ++ + +P + PS+P WSR +P
Sbjct: 432 EEKKPLEAKTTPNVG-SGASSAFQKNTPSPSPKTTPSKPSWSRPTP 476
>SB_26402| Best HMM Match : K-box (HMM E-Value=1)
Length = 166
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = +3
Query: 96 RLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASD 275
+L + ++QQ++ S + VDS++ + EK + + SK+ L+++
Sbjct: 70 KLGETEYILQQMDSSVKQTAAIKEKDVDSLQQQLAEKDRRIEELNSKLESSKKDVLNSNQ 129
Query: 276 AECFSLCLGAGPL 314
+C GP+
Sbjct: 130 EKCLEKFKANGPV 142
>SB_59620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 303 RPGTARNTRRPKPTELSACCRERSETPRHRNKPSRP 196
RP T +T ++CC P H N SRP
Sbjct: 184 RPETVCHTTLTLVNRTNSCCHTTPNLPSHLNTQSRP 219
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -2
Query: 345 RAVSRDIRTTTEARRPGTARNTRR--PKPTELSACCRERSETPRHRNKPSRPV 193
R R + T+ P R P+PT+ R+R T R KP++P+
Sbjct: 257 RPTERPTKKPTKPLLPEVEPEEERATPRPTKAKPTTRKRMPTERPTKKPTKPL 309
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -1
Query: 316 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 212
H P+P HS+ E LP PSPE
Sbjct: 741 HSQPSPEHSQPSPEHSLPSQEHSLPSPEHSQPSPE 775
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 357 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETP 223
S RC+ ++ ++ ++PG+A +PK + S R+RS +P
Sbjct: 1892 SRRCKTTAKALKKAKGKQKPGSATKKTKPK-QDSSKKKRKRSPSP 1935
>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
Length = 390
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 354 GRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPR 220
G+ A + + T ARRP RRP PT + R + TPR
Sbjct: 11 GQNNATTTGVVPTPRARRPVPTPRARRPNPTTKA---RRPAPTPR 52
>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 328 HQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 164
H HH RH KH+A A R + D+P+ + T +S +S FP
Sbjct: 167 HPSHHHVTKSRHQTKHNAKHATRVFSI------DSPNEDSQGKTANIS-DSASFP 214
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -3
Query: 401 GXPG*RGXQPRRST--PPG--GAEP*AGTSGPPQRPGAQAQRETLGVR 270
G G RG + RR PPG GA+ G GPP G + ++ G R
Sbjct: 35 GEKGNRGRRGRRGPRGPPGKPGADGKPGIRGPPGPKGDKGEKGDAGPR 82
>SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 283 VSRCAWAPGLCGGPDVPAH 339
V RC GL GGP+ PAH
Sbjct: 45 VERCCRFEGLPGGPEDPAH 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,269,467
Number of Sequences: 59808
Number of extensions: 275215
Number of successful extensions: 1047
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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