Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h06f
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell l... 34 0.057
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 34 0.057
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 34 0.057
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 31 0.30
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 31 0.40
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.53
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.53
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.53
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.70
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 30 0.93
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 30 0.93
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 30 0.93
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 1.6
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 2.8
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 28 3.7
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 28 3.7
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 3.7
J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. 28 3.7
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 3.7
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 27 4.9
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 27 4.9
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 27 4.9
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 27 4.9
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 27 4.9
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 27 4.9
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 4.9
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 27 4.9
AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protei... 27 4.9
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 27 4.9
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 27 4.9
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 27 6.5
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 27 6.5
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 6.5
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 27 8.6
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 8.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 8.6
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 27 8.6
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 8.6
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 27 8.6
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 8.6
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 8.6
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 8.6
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 27 8.6
>U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform a protein.
Length = 297
Score = 33.9 bits (74), Expect = 0.057
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 383 GXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 258
G PR +T GGA P +GT+ PP P + L +R Q+
Sbjct: 256 GLLPRGATSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 297
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 33.9 bits (74), Expect = 0.057
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 383 GXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 258
G PR +T GGA P +GT+ PP P + L +R Q+
Sbjct: 556 GLLPRGATSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 597
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 33.9 bits (74), Expect = 0.057
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 401 GXPG*RGX--QPRRSTPPGGAEP*AGTSGPPQRPGAQAQ 291
G PG RG +P P G A P G SGPP RPGA Q
Sbjct: 188 GQPGQRGPPGEPGALLPGGDAPP--GPSGPPGRPGAPGQ 224
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 31.5 bits (68), Expect = 0.30
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 401 GXPG*RGX--QPRRSTPPG-GAEP*AGTSGPPQRPGAQAQ 291
G PG +G QP R+ P G EP G GPP +PGA Q
Sbjct: 181 GAPGDKGPAGQPGRNGPDGPNGEP--GPKGPPGQPGADGQ 218
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.40
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*A--GTSGPPQRPG 303
G PG R QP +S PPG P G +GPP +PG
Sbjct: 226 GAPG-RDGQPGQSGPPGPPGPPGNVGEAGPPGKPG 259
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -3
Query: 395 PG*RGXQPRRSTPP---GGAEP*AGTSGPPQRPGAQAQ 291
P RG P S PP GG+ P AGT PP P + Q
Sbjct: 301 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 338
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -3
Query: 395 PG*RGXQPRRSTPP---GGAEP*AGTSGPPQRPGAQAQ 291
P RG P S PP GG+ P AGT PP P + Q
Sbjct: 322 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 359
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -3
Query: 395 PG*RGXQPRRSTPP---GGAEP*AGTSGPPQRPGAQAQ 291
P RG P S PP GG+ P AGT PP P + Q
Sbjct: 307 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 344
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 30.3 bits (65), Expect = 0.70
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -2
Query: 345 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 169
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
PG G P P S PGGV +G P+Y
Sbjct: 257 PGADGNPGAPGQ-SGTPGGVGEKGICPKY 284
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
PG G P P S PGGV +G P+Y
Sbjct: 224 PGADGNPGAPGQ-SGTPGGVGEKGICPKY 251
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
PG G P P S PGGV +G P+Y
Sbjct: 257 PGADGNPGAPGQ-SGTPGGVGEKGICPKY 284
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -3
Query: 332 GTSGPPQRPGAQAQRETLGVRS 267
GT+GP +RP AQ +R++ G+R+
Sbjct: 38 GTAGPSRRPTAQPRRQSGGIRT 59
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPG----GAEP*AGTSGPPQRPGAQAQRETLG 276
G PG G +P + PPG EP G+ G P RPG R G
Sbjct: 180 GPPG-PGGKPGPAGPPGENGRNGEPQPGSPGEPGRPGQPGSRGPAG 224
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPG----GAEP*AGTSGPPQRPGAQAQRETLG 276
G PG G +P + PPG EP G G P +PG QR G
Sbjct: 182 GPPG-PGGKPGPAGPPGENGNNGEPQPGAPGEPGQPGQPGQRGPAG 226
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSR 264
G PG G Q P EP G G P R G + R G++ +
Sbjct: 194 GHPGKPGSQGPPGPPGHSDEPKPGQPGQPGRAGPRGPRGVAGIKGK 239
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQR 288
G PG +G P P GT+GPP PG + ++
Sbjct: 259 GGPGPKGPPGPAGQPGSDGNP--GTAGPPGNPGGEGEK 294
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 328 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 164
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQ 291
G PG G +TP GGA G GPP PG Q
Sbjct: 184 GAPG--GPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQ 218
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 359 PPGGAEP*AGTSGPPQRPG 303
PPG A P AG +GPP PG
Sbjct: 170 PPGPAGP-AGNAGPPGAPG 187
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTP-PGGAEP*AGTSGPPQRPG 303
G PG +G Q R TP P GA G +G P +PG
Sbjct: 188 GAPG-QGGQRSRGTPGPAGAPGPQGPAGGPGQPG 220
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTP-PGGAEP*AGTSGPPQRPG 303
G PG +G Q R TP P GA G +G P +PG
Sbjct: 188 GAPG-QGGQRSRGTPGPSGAPGPQGPAGGPGQPG 220
>Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical
protein B0491.2 protein.
Length = 324
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQ 261
G PG +G PR P G G GPP PG G + RQ
Sbjct: 237 GRPGPKG--PRGDQGPTGPAGQNGLHGPPGEPGTVGPEGPSGKQGRQ 281
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTP----PGGAEP*AGTSGPPQRPGAQAQRETL 279
G PG +G R P P G AG G P +PGA Q T+
Sbjct: 162 GAPGEQGPNGRPGAPGAPGPQGPPGTAGNDGTPGQPGAPGQVRTV 206
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGA 300
G PG G + P G P G+ GPP PGA
Sbjct: 230 GPPGQAGPDGQPGAPGGPGTP--GSKGPPGNPGA 261
>J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein.
Length = 324
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQ 261
G PG +G PR P G G GPP PG G + RQ
Sbjct: 237 GGPGPKG--PRGDQGPTGPAGQNGLHGPPGEPGTVGPEGPSGKQGRQ 281
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPG 303
G G G RS PGG G GPP PG
Sbjct: 332 GRHGGHGRHGSRSGSPGGRHGHGGRHGPPHCPG 364
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 757 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 789
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 360 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 392
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 720 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 752
>Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical
protein C36B1.1c protein.
Length = 650
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 232 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 264
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 757 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 789
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 360 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 392
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 720 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 752
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 401 GXPG*RGXQPRR-STPPG--GAEP*AGTSGPPQRPG 303
G PG G + RR PPG GAE +G G P PG
Sbjct: 218 GNPGNNGVRVRRIPGPPGPRGAEGDSGVQGGPGSPG 253
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
PG G P P + PPG RG P+Y
Sbjct: 257 PGADGNPGAPGP-AGPPGSPGERGICPKY 284
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRET 282
G PG G P + PG P G GPP PGA +E+
Sbjct: 166 GEPGSPGL-PGQDAAPGEPGP-KGPKGPPGAPGAPEHQES 203
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
PG G P P + PPG RG P+Y
Sbjct: 256 PGADGNPGAPGP-AGPPGSPGERGICPKY 283
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 316 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 212
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
PG G P P + PPG RG P+Y
Sbjct: 257 PGADGNPGAPGP-AGPPGSPGERGICPKY 284
>AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protein
protein.
Length = 650
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 232 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 264
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 360 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 392
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 304 PGLCGGPDVPAHGSAPPGGVDRRGCXPRYPGHP 402
PGL G P P G+ G D P PG P
Sbjct: 699 PGLAGPPGPPGSGTGHGSGADGPQGPPGLPGAP 731
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 321 TTTEARRPGTARNTRRPKPTELSACCRERSETP 223
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTP-PGGAEP*AGTSGPPQRPG 303
G PG G + R TP P G + TSGPP PG
Sbjct: 208 GPPGPPGPKGPRGTPGPTGPKNFYITSGPPGPPG 241
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRP 306
G P PR T PG A P G G PQRP
Sbjct: 282 GYPAQAPAAPR--TTPGSAGPGTGPPGTPQRP 311
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRP 306
G P PR T PG A P G G PQRP
Sbjct: 280 GYPAQAPAAPR--TTPGSAGPGTGPPGTPQRP 309
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 339 VSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSET 226
V +++RT+ RRP T R P+ SA R++ ++
Sbjct: 26 VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDS 63
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 401 GXPG*RGXQ-PRRSTPPGGAEP*AGTSGPPQRPGAQAQ 291
G PG G P PG P AG +GP +PGA Q
Sbjct: 199 GAPGQPGQDAPSEPITPGAPGP-AGPAGPQGQPGAPGQ 235
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -3
Query: 377 QPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQRRPVTGINLL 201
QP++ TP G+ G+ GPP P R +Q AA SA P+ +NLL
Sbjct: 431 QPQQITPQPGSLGPMGSLGPPTAPPGSQPMNPQQQRIQQQ-QQAAPSASNSPLL-VNLL 487
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -3
Query: 395 PG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLG 276
PG P + PPG P AG GP PG Q T G
Sbjct: 145 PGPPPKPPCQKCPPGPPGP-AGPPGPKGLPGPQGDAGTSG 183
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 345 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPS 202
RA SR ARR + ++ P P A R +S R R PS
Sbjct: 333 RAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS 380
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 295 AWAPGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
A APG G P P + PGG +G P+Y
Sbjct: 255 AGAPGADGNPGGPG-TAGKPGGEGEKGICPKY 285
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLG 276
G PG G QP + P G A AGT G P + GA ++ G
Sbjct: 245 GQPGSAG-QPGQDGPQGPAGD-AGTDGAPGQAGAAGEQGEAG 284
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 295 AWAPGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
A APG G P P + PGG +G P+Y
Sbjct: 255 AGAPGADGNPGGPG-TAGKPGGEGEKGICPKY 285
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 301 APGLCGGPDVPAHGSAPPGGVDRR--GCXPRYPGHP 402
APG G P G+ P G G P++PGHP
Sbjct: 439 APGGSGAPPPGPPGAYPGNGAPGGPPGGPPQFPGHP 474
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*A----GTSGPPQRPGAQAQRETLG 276
G PG RG P PPG AE G +GPP +PG T G
Sbjct: 220 GYPGPRGA-PGPVGPPGVAEEGPDGLPGPAGPPGKPGMPGPMGTPG 264
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 303 RPGTARNTRRPKPTEL 256
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTP--PG--GAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 258
G PG RG P PG G G +G P PGA + T GVR +
Sbjct: 220 GPPGPRGEAGPAGQPGSPGNDGESGKPGNAGRPGPPGAPGKNGTPGVRGEDA 271
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 26.6 bits (56), Expect = 8.6
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Frame = -3
Query: 401 GXPG*RGXQPRR-----STPPG--GAEP*AGTSGPPQRPGAQAQ-RETLG 276
G PG G P R + PPG G GT G P PGA Q ET G
Sbjct: 183 GAPGEDGNTPSRGGVGEAGPPGPPGTSGNPGTDGAPGNPGAPGQVTETPG 232
Score = 26.6 bits (56), Expect = 8.6
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSA 234
G PG G + + PG P AG +GPP PG + G S A AG A
Sbjct: 216 GAPGNPGAPGQVTETPGTPGP-AGAAGPPGPPGPAGNPGSAGA-SEPGPAGPAGDA 269
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 295 AWAPGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
A APG G P P + PGG +G P+Y
Sbjct: 255 AGAPGADGNPGGPG-TAGKPGGEGEKGICPKY 285
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 295 AWAPGLCGGPDVPAHGSAPPGGVDRRGCXPRY 390
A APG G P P + PGG +G P+Y
Sbjct: 255 AGAPGADGNPGGPG-TAGKPGGEGEKGICPKY 285
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 26.6 bits (56), Expect = 8.6
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = -3
Query: 401 GXPG*RGXQPRRSTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSA 234
G PG G + + PG P AG +GPP PG + G S A AG A
Sbjct: 226 GAPGNPGAPGQVTETPGTPGP-AGAAGPPGPPGPAGNPGSAGA-SEPGPAGPAGDA 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,318,046
Number of Sequences: 27780
Number of extensions: 197517
Number of successful extensions: 1342
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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