Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h04r
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    32   0.50 
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    32   0.50 
Z74043-4|CAA98541.1|  733|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
 Frame = +3

Query: 609 LNSFYLYFFK--------HSPIIFCWYSIFFFHYVS 692
           +N FY+ +F         H P+I C Y IFFF Y++
Sbjct: 49  INQFYILYFSFLRFHELNHFPLIICIYLIFFFEYIT 84


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
 Frame = +3

Query: 609 LNSFYLYFFK--------HSPIIFCWYSIFFFHYVS 692
           +N FY+ +F         H P+I C Y IFFF Y++
Sbjct: 54  INQFYILYFSFLRFHELNHFPLIICIYLIFFFEYIT 89


>Z74043-4|CAA98541.1|  733|Caenorhabditis elegans Hypothetical
           protein T19B10.8 protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -1

Query: 450 ISMYFA*SSRDTLNYNLTYVL*TSIYIELFVLLVSCTTY 334
           IS++FA   R+TL Y+ T VL T++ + LF ++   T Y
Sbjct: 479 ISVFFAILVRETLFYSTTAVLLTNL-VALFFVIHGSTDY 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,998
Number of Sequences: 27780
Number of extensions: 250087
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)