Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h04f
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.70 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.6  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 191 PSNRIQFA---KPFFVATVLQQLKKKQFTNKQKFSYLSNKLVKSI 66
           PSNR+ +A   KP     V   + +KQ TN    ++++ KLV+ +
Sbjct: 336 PSNRVWYAFYEKPRLHLIVEPMVARKQLTNNYLINFITQKLVELV 380


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 538 LRIITASWIT-FVSKNPTVSV 597
           LRIIT  WIT F+S++ T S+
Sbjct: 155 LRIITCLWITYFLSRSVTYSI 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,897
Number of Sequences: 5004
Number of extensions: 44452
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)