Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h04f
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0008 - 30978448-30978593,30978673-30978733,30978822-309790...    30   1.6  
03_06_0006 + 30963331-30963457,30963751-30964715,30965166-309653...    30   1.6  
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321...    28   5.0  
01_01_0038 + 288522-288572,289395-289512,289790-289809,290077-29...    28   6.6  

>03_06_0008 -
           30978448-30978593,30978673-30978733,30978822-30979007,
           30979458-30980422,30980716-30980842
          Length = 494

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -2

Query: 520 FPSVHYLRAHRRFGQKINTFQTGNIHG*GV 431
           FP VH + A   F Q  N F TGNI   GV
Sbjct: 226 FPPVHPMNAFDPFNQGFNFFHTGNIPPYGV 255


>03_06_0006 +
           30963331-30963457,30963751-30964715,30965166-30965351,
           30965440-30965500,30965580-30965623
          Length = 460

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -2

Query: 520 FPSVHYLRAHRRFGQKINTFQTGNIHG*GV 431
           FP VH + A   F Q  N F TGNI   GV
Sbjct: 226 FPPVHPMNAFDPFNQGFNFFHTGNIPPYGV 255


>02_01_0444 +
           3212646-3212686,3213093-3213225,3213467-3213570,
           3214360-3214504,3214592-3214732,3214835-3216298
          Length = 675

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 173 FAKPFFVATVLQQLKKKQFTNKQKFSYLSN 84
           F +PF  +  +Q+L+ K FTN++K   + +
Sbjct: 133 FVEPFVSSEFVQKLQNKSFTNEEKLQVMQS 162


>01_01_0038 +
           288522-288572,289395-289512,289790-289809,290077-290109,
           290648-290779,290859-290948,291402-291527
          Length = 189

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 377 KNSVSYLFSKMIDCAVCIHTLSMYVACLKSIDFLAKSSM 493
           KNS ++LFSK +    C H   + +  L  +D +A + +
Sbjct: 32  KNSHNFLFSKDLFFVYCFHQSYLMLGTLTELDVIAATQL 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,856,905
Number of Sequences: 37544
Number of extensions: 218887
Number of successful extensions: 374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)