Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h04f
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   6.7  
SB_58057| Best HMM Match : RVT_1 (HMM E-Value=0.0085)                  28   6.7  

>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 292 IAYDEEYEFSFSYCITYE*LMAMVNSYEYAKINFLAIEFNLQNLFSLRQFY 140
           IAYD + E+ + Y   Y+ L      Y+Y  +     E+NL+ +  L + Y
Sbjct: 483 IAYDSKREWVYIYSKAYKHL----EKYKYPNVQIYDSEWNLEGIMELPKSY 529


>SB_58057| Best HMM Match : RVT_1 (HMM E-Value=0.0085)
          Length = 576

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 574 KQKLSMMPLLFATIKQALFPSV-HYLRAHRRFGQKINTFQTGNIH 443
           KQ   + P LF+ +  A+   V   + A + FG KINT +T  +H
Sbjct: 273 KQGCVLAPTLFSLLFSAMLTDVLKMMSACKNFGLKINTKKTEAMH 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,548
Number of Sequences: 59808
Number of extensions: 288017
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)