Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h04f
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical...    30   1.5  
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...    29   3.4  
AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical
           protein Y116A8C.14 protein.
          Length = 861

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 200 N*FPSNRIQFAKPFFVATVLQQLKKKQFTNKQKFSYLSNKLVKSI 66
           N FP    Q   P F A V+ +  +K+F NK+ F    + +V SI
Sbjct: 773 NAFPYRGDQGRTPVFTAQVIWKFLRKKFNNKRSFYVFISAIVFSI 817


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 534 LNKHYFRASITYARIEDLARKSIL-FRQATYMDKVCIQ 424
           LN+HY+   I Y R  DL +K +L   + ++MD V ++
Sbjct: 198 LNRHYYSIPIAY-RTHDLEQKMLLNLNKLSWMDAVSVE 234


>AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical
           protein C23H5.2 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 499 RAHRRFGQKINTFQTGNIHG*GVYTNCTVYHFRK 398
           R H R  +    F+T   H  GV+  CT++HFRK
Sbjct: 95  RVHGRLSES-RGFRT---HHWGVFIECTLFHFRK 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,446
Number of Sequences: 27780
Number of extensions: 243958
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)