Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h03r
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    50   3e-07
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    49   6e-07
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = -2

Query: 752 YKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQ 624
           YKDSTLIMQLLRDNLTLWTSD + + +SA  E    A   E++
Sbjct: 215 YKDSTLIMQLLRDNLTLWTSDAEYN-QSAKEEAPAAAAASENE 256


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = -2

Query: 752 YKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQD 636
           YKDSTLIMQLLRDNLTLWTSD +    +A     E AQ+
Sbjct: 216 YKDSTLIMQLLRDNLTLWTSDAEYSAAAAGG-NTEGAQE 253


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 622 SWSSPSCAGSFCSASADSPSPCMSEVHSVRLSRSSCMMSVESL 750
           S SS S + +F SAS  SPS   S + S     SS   S  SL
Sbjct: 593 SISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSL 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,173
Number of Sequences: 5004
Number of extensions: 43970
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)