Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h03f
(617 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 27 0.64
EF519384-1|ABP68493.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519383-1|ABP68492.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519381-1|ABP68490.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519380-1|ABP68489.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519374-1|ABP68483.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519371-1|ABP68480.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519369-1|ABP68478.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519366-1|ABP68475.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519359-1|ABP68468.1| 506|Anopheles gambiae LRIM1 protein. 26 1.1
EF519372-1|ABP68481.1| 506|Anopheles gambiae LRIM1 protein. 25 1.5
EF519368-1|ABP68477.1| 506|Anopheles gambiae LRIM1 protein. 25 1.5
AY903308-1|AAX48940.1| 241|Anopheles gambiae female-specific do... 25 2.0
AY903307-1|AAX48939.1| 283|Anopheles gambiae male-specific doub... 25 2.0
AF063021-4|AAC16248.1| 93|Anopheles gambiae unknown protein. 25 2.6
U42429-1|AAB54088.1| 596|Anopheles gambiae engrailed protein. 23 7.9
U42214-1|AAB58461.1| 596|Anopheles gambiae engrailed protein. 23 7.9
M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles ... 23 7.9
EF519363-1|ABP68472.1| 503|Anopheles gambiae LRIM1 protein. 23 7.9
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 26.6 bits (56), Expect = 0.64
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 139 KLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWR 297
KL+ E+ + ++ + K RN+ N VE R+ S+ Y V+ SWR
Sbjct: 702 KLSLAPEKTELLMISSKRSGYRNIPVNICGVEVRSKRSIRYLGVMLHDHLSWR 754
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 195 SITQRVRQ*ADSGGEEPAVGRLQERDRR 278
S Q ++Q D+G ++GR RDRR
Sbjct: 544 STLQAIQQVVDAGRRALSLGRTNNRDRR 571
>EF519384-1|ABP68493.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519383-1|ABP68492.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519381-1|ABP68490.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519380-1|ABP68489.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519374-1|ABP68483.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519371-1|ABP68480.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519369-1|ABP68478.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519366-1|ABP68475.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519359-1|ABP68468.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.8 bits (54), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506
>EF519372-1|ABP68481.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.4 bits (53), Expect = 1.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELLVREQNLAS 506
>EF519368-1|ABP68477.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 25.4 bits (53), Expect = 1.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 252
+ +LAE+ R ++ EA VAS N + EL V E+NL S
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELLVREQNLAS 506
>AY903308-1|AAX48940.1| 241|Anopheles gambiae female-specific
doublesex protein protein.
Length = 241
Score = 25.0 bits (52), Expect = 2.0
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +3
Query: 483 NEGRLPPVPGRVRDRQRPQGGCRELAGRVQGSLR-HRHDRTAPH 611
NEG +PP P R D G G L HR PH
Sbjct: 99 NEGEVPPEPPRSFDCDSSTGSMASAPGTSSVPLTIHRRSPGVPH 142
>AY903307-1|AAX48939.1| 283|Anopheles gambiae male-specific
doublesex protein protein.
Length = 283
Score = 25.0 bits (52), Expect = 2.0
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +3
Query: 483 NEGRLPPVPGRVRDRQRPQGGCRELAGRVQGSLR-HRHDRTAPH 611
NEG +PP P R D G G L HR PH
Sbjct: 99 NEGEVPPEPPRSFDCDSSTGSMASAPGTSSVPLTIHRRSPGVPH 142
>AF063021-4|AAC16248.1| 93|Anopheles gambiae unknown protein.
Length = 93
Score = 24.6 bits (51), Expect = 2.6
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Frame = -3
Query: 75 NPNRQV--TYSPRWPRPPT 25
+P+R + T RWPRPPT
Sbjct: 13 SPSRPILTTRGRRWPRPPT 31
>U42429-1|AAB54088.1| 596|Anopheles gambiae engrailed protein.
Length = 596
Score = 23.0 bits (47), Expect = 7.9
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -2
Query: 208 RCVMLHSSSPPPFRHSAQPAQLTLLYTHYL--PFPTLWMTNDFTLTKSES 65
RC + SPP HS+Q T T P P T T T S
Sbjct: 6 RCSPQSAPSPPHHHHSSQSPTSTTTVTMATASPVPACTTTTSTTSTSGAS 55
>U42214-1|AAB58461.1| 596|Anopheles gambiae engrailed protein.
Length = 596
Score = 23.0 bits (47), Expect = 7.9
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -2
Query: 208 RCVMLHSSSPPPFRHSAQPAQLTLLYTHYL--PFPTLWMTNDFTLTKSES 65
RC + SPP HS+Q T T P P T T T S
Sbjct: 6 RCSPQSAPSPPHHHHSSQSPTSTTTVTMATASPVPACTTTTSTTSTSGAS 55
>M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 574
Score = 23.0 bits (47), Expect = 7.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 313 EQKEETKGAEDKLNMIRAYRSQVEKELRDICSDIL 417
E+KEE K E+KL + + RD+ + +L
Sbjct: 154 EEKEEAKRREEKLEAQMEKLAAAHQRDRDVLNSLL 188
>EF519363-1|ABP68472.1| 503|Anopheles gambiae LRIM1 protein.
Length = 503
Score = 23.0 bits (47), Expect = 7.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 133 KAKLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERN 243
+ +LAE+ R ++ EA VAS N + EL V E+N
Sbjct: 466 ETQLAEENARLKKLNGEADLAVASANATLQELVVREQN 503
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,232
Number of Sequences: 2352
Number of extensions: 11919
Number of successful extensions: 54
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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