Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h02r
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.69
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 28 1.2
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.6
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 1.6
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 3.7
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 3.7
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 4.8
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 4.8
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 6.4
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 25 8.5
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 25 8.5
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.69
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 431 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 520
KFI D +N F+ I Y F F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 426 SSNSLQTLKTFFIHLLKTYTCFFFLIP 506
SS +L +F+ L++ + CFFF+ P
Sbjct: 50 SSGPFISLSFWFLSLVRGFVCFFFMFP 76
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 407 QTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 529
++ + N ++TD +NIF +F+ N + F + L I C
Sbjct: 71 KSSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 199 IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 288
+G I HL K D+N K ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 386 FFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSI 520
+F +++T K FI KNIF F +FF F IL SI
Sbjct: 84 WFPRNKIRTAKYTPIDFIP--KNIFLQFQNVANLFFLFLVILQSI 126
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 163 KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 267
K DG+ S GE++H + ++ KN+ + I+ L
Sbjct: 301 KLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +2
Query: 368 ITTEPIFFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SL 547
+ T+ I+F + T + + + +++ F S ++N+ FF S G C+ L
Sbjct: 22 VITQLIYFLTSKKITN-LGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFL 80
Query: 548 F 550
F
Sbjct: 81 F 81
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 151 KSF*KH---DGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVKKTKI 306
KSF KH D L ++ S+ ++ KP KN N + HTL + L++ +K+
Sbjct: 223 KSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTL-LSQDQLIELSKL 276
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 417 KLISSNSLQTLKTFFIHLLKTY 482
KL+SSN+LQ + F+ ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 394 CKKYW-FCCNQTIQ*IKLDIS**FTTQTVFLFWFFLPSGC*GTLMYELLCFYFYF 233
C++ W + + +K + F + +WF + GT M ++ YFYF
Sbjct: 76 CRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTEMAQITTPYFYF 130
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 347 FYLLNCLITTEPIFFAFQRLQTQKINIFKF 436
FYLL+ I T P+F T I+I K+
Sbjct: 46 FYLLHVRINTSPLFIKTTTRPTALIHITKY 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,671
Number of Sequences: 5004
Number of extensions: 50621
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -