Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h02r
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   0.99 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   0.99 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.2  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 389 FAFQRLQTQKINIFKFITDVKNIFYSFIKNVYM 487
           F   + +T K+ I+K+   + +I ++  K V+M
Sbjct: 81  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 113


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 389 FAFQRLQTQKINIFKFITDVKNIFYSFIKNVYM 487
           F   + +T K+ I+K+   + +I ++  K V+M
Sbjct: 64  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 96


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 538 LVSIYLCLRIVVLSLSTLAPE 600
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 538 LVSIYLCLRIVVLSLSTLAPE 600
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 9   IYNAKYTETIWVCTSCTL 62
           +YN K T TI   T C L
Sbjct: 171 LYNCKRTATITAATDCQL 188


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 238 KNKNITIHTLKFLSNHLVKKTKIE 309
           ++  + I+ LKFL    VK +K+E
Sbjct: 335 ESNTMFINILKFLKQKYVKNSKLE 358


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 437 ITDVKNIFYSFIKNVYMFFFFNSIL 511
           +T V   F+SFI +  + +F N I+
Sbjct: 388 LTVVCLAFWSFIVSTILLWFINKII 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,530
Number of Sequences: 438
Number of extensions: 3640
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)