Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h01r
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   256   2e-69
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   256   3e-69
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   225   7e-60
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    30   0.42 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    29   0.73 
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.73 
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   1.7  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   9.0  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  256 bits (628), Expect = 2e-69
 Identities = 118/218 (54%), Positives = 158/218 (72%), Gaps = 1/218 (0%)
 Frame = -2

Query: 688 PESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 509
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 508 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 329
           AR  GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA   ML+
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135

Query: 328 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 149
           + EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195

Query: 148 FTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDRG 38
           +TVG  FK A+NFLWPFKL++P GGWR +K  H+++ G
Sbjct: 196 YTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGG 233


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  256 bits (626), Expect = 3e-69
 Identities = 120/225 (53%), Positives = 162/225 (72%), Gaps = 1/225 (0%)
 Frame = -2

Query: 709 SKKLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 530
           SK+    PES+LK           R+    +++++  KK+  I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 529 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 350
           +I L R+AR  GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129

Query: 349 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 170
           AT  ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189

Query: 169 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDRG 38
           EDLIHEI+TVG  FK A+NF+WPF+L++P GGWR +K  H+++ G
Sbjct: 190 EDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGG 234


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  225 bits (549), Expect = 7e-60
 Identities = 103/218 (47%), Positives = 147/218 (67%)
 Frame = -2

Query: 688 PESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 509
           PE +LK           R++  + ++ +  K ++E FKRAE ++  YR +ER+ IRL R 
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74

Query: 508 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 329
           A+N+G+ +VP E KL FVIRI G+  + PK+RKVL+L RL +INN VFVR NKA   MLR
Sbjct: 75  AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134

Query: 328 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 149
           I EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEI 194

Query: 148 FTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDRGR 35
           + VG  FK  + FLWPF L        +K + + + GR
Sbjct: 195 YNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGR 232


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 295 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVE-DLIHEIFTVGEKFKYA 119
           N KSV  +    G   L+G +I I+ +  ++ R+       VE +L H++  +    K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFA 201

Query: 118 SNFLWPFK 95
           S F  PF+
Sbjct: 202 SGFFGPFR 209


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 66  LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 200
           LR P   L  L+GH   +  L +SP  +     SST   +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -2

Query: 607 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 491
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 53  MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 148
           MNGL  P   W +   GP  + R++  F   E
Sbjct: 75  MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 122 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 301
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y     L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376

Query: 302 S 304
           S
Sbjct: 377 S 377


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 508  ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 389
            + N+G YY  G   +AFV  I G+ + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 574 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 473
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +2

Query: 29  PKSPPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSN-----SEDLMDEVLNTDNVVFM 193
           P    ++I + L AP+ SW   +    E+  +L + S       + + +E+  TD  V  
Sbjct: 758 PFGKDLEIDSNLFAPSNSWFNSWHSRLELDSILAIISQFSLPVYKKMNEELSTTDEAV-- 815

Query: 194 EPLLNNAVGSD 226
             LL N+V +D
Sbjct: 816 -KLLANSVLND 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,835
Number of Sequences: 5004
Number of extensions: 68576
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)