Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11h01f
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 186 2e-47
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 180 6e-46
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 100 1e-21
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 1.7
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 5.3
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 7.0
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 9.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 186 bits (452), Expect = 2e-47
Identities = 87/160 (54%), Positives = 116/160 (72%)
Frame = +2
Query: 146 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 325
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 326 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 505
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 506 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 625
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPL 166
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 180 bits (439), Expect = 6e-46
Identities = 83/156 (53%), Positives = 114/156 (73%)
Frame = +2
Query: 158 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 337
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 338 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 517
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 518 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 625
R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPL 165
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 100 bits (239), Expect = 1e-21
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Frame = +2
Query: 131 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 310
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 311 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 481
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 482 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 625
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPL 168
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 224 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 364
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 369 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 467
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 532 LHCLGIPQLKECP*VSIQTWIRQAEW 609
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 348 IVATTTFPGKPNWHLSSESVVSTKFH 425
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,664,728
Number of Sequences: 37544
Number of extensions: 297565
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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