Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g19f
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    28   1.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   1.8  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    27   2.4  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.2  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   4.2  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    25   9.7  

>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 133 YSRTKLVQLLYQIMWPLILQFMRANAAYITLPVAALVGVIGYNLENILSDKYTPYNKSIE 312
           Y RT ++ + Y      IL  M     +I LP+A ++G +   L++ ++ + T YN   E
Sbjct: 434 YFRTWILVVFYGFASATILP-MSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFE 492


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 217  ITLPVAALVGVIGYNL----ENILSDKYTPYNKSIEDQRVDRLTDEVLKDPTNVKKLKYQ 384
            + + V+   G +G NL      IL + +  YN SIEDQ +DR+     + P  V +   +
Sbjct: 794  LVMLVSLKAGSVGLNLTIANHVILQEPF--YNPSIEDQAIDRVHRLGQQKPVTVYRFITK 851

Query: 385  ENVLGKNVSPSLEK 426
            + +  + VS   +K
Sbjct: 852  DTIEERIVSVQRKK 865


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +1

Query: 328 RLTDEVL-KDPTNVKKLKYQENVL---GKNVSPSLEKD*SYKKEFISFKPDS 471
           +LT+E+L KD  N     ++  VL    K VS SLE++ +Y K+ I F PD+
Sbjct: 166 KLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNYLKDKILFAPDN 217


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 DKYTPYNKSIEDQRVDRLTDEV-LKDPTNVKKLKYQENVLGKNVSPSLEKD 429
           D ++  +K    +  +   DE  LK P   KK K+QE +  KN+  S  +D
Sbjct: 507 DSFSNISKKRNSEEANDENDETNLKIPIPEKKRKFQEVLQSKNILVSSTED 557


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 120 IEFKINLHVLNISEHLH*M*FISNYILVK 34
           IE+K+ L V N+SE+L     ++N I +K
Sbjct: 392 IEYKLRLLVQNVSENLQKRGLVTNSIAIK 420


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 494 VWIFSSIHESGLKL 453
           V+IFSS+HESG +L
Sbjct: 343 VYIFSSLHESGKQL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,527
Number of Sequences: 5004
Number of extensions: 48152
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)