Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g19f
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70035-2|CAA93862.1|  440|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    28   5.1  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    28   5.1  
U12964-15|ABQ13071.1|  108|Caenorhabditis elegans Arginyl aa-trn...    27   8.9  
U12964-14|AAU05575.1|  692|Caenorhabditis elegans Arginyl aa-trn...    27   8.9  
U12964-13|AAA91224.2|  713|Caenorhabditis elegans Arginyl aa-trn...    27   8.9  

>Z70035-2|CAA93862.1|  440|Caenorhabditis elegans Hypothetical
           protein R09D1.2 protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 235 ALVGVIGYNLENILSDKYTPYNKSIEDQRVDRLTDEVLKDPTNVKKLKYQENVLG 399
           A  G++ Y L  ++   Y   +  IE Q +      V  DP N K   Y++ ++G
Sbjct: 36  AFCGIVAYGLTFLIFRYYGNQDFIIEHQEILYQLSTVKPDPINTKNRDYKKRIVG 90


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 409 KHSFRAHSPDISASSHWLGLSILHPLACLHVGLRWTCYT 293
           KH    + P+++A  +    S  HP AC+  G R+T  T
Sbjct: 214 KHPDAKNDPNVTAVRYISAESPKHPYACIECGKRFTTVT 252


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 409 KHSFRAHSPDISASSHWLGLSILHPLACLHVGLRWTCYT 293
           KH    + P+++A  +    S  HP AC+  G R+T  T
Sbjct: 332 KHPDAKNDPNVTAVRYISAESPKHPYACIECGKRFTTVT 370


>U12964-15|ABQ13071.1|  108|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein1, isoform c protein.
          Length = 108

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
 Frame = +1

Query: 253 GYNLENILSDKYTPYNKSIEDQRVDRLTDEVLK------DPTNVK-KLKYQENVLGKNVS 411
           GY+  +  SD+    N+ I   +   LTDE+L+      D   +  KLKY++++L K+++
Sbjct: 10  GYSDYSAASDQAALLNRLITAMQKGELTDELLEHIPELGDAKKLNDKLKYRKSILEKSIA 69

Query: 412 PSLEKD 429
               K+
Sbjct: 70  EQAAKN 75


>U12964-14|AAU05575.1|  692|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein1, isoform b protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
 Frame = +1

Query: 253 GYNLENILSDKYTPYNKSIEDQRVDRLTDEVLK------DPTNVK-KLKYQENVLGKNVS 411
           GY+  +  SD+    N+ I   +   LTDE+L+      D   +  KLKY++++L K+++
Sbjct: 10  GYSDYSAASDQAALLNRLITAMQKGELTDELLEHIPELGDAKKLNDKLKYRKSILEKSIA 69

Query: 412 PSLEKD 429
               K+
Sbjct: 70  EQAAKN 75


>U12964-13|AAA91224.2|  713|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein1, isoform a protein.
          Length = 713

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
 Frame = +1

Query: 253 GYNLENILSDKYTPYNKSIEDQRVDRLTDEVLK------DPTNVK-KLKYQENVLGKNVS 411
           GY+  +  SD+    N+ I   +   LTDE+L+      D   +  KLKY++++L K+++
Sbjct: 10  GYSDYSAASDQAALLNRLITAMQKGELTDELLEHIPELGDAKKLNDKLKYRKSILEKSIA 69

Query: 412 PSLEKD 429
               K+
Sbjct: 70  EQAAKN 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,570,403
Number of Sequences: 27780
Number of extensions: 271843
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)