Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g15r
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    28   1.7  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.2  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    27   2.9  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   6.8  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   6.8  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   6.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   9.0  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 124 RDIIFSVISNNGREKNVTCRSIPSA 198
           RD+I +V+S  G E  + CR  PS+
Sbjct: 133 RDLIITVVSAMGEETALACRDAPSS 157


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 28  VIQSPLTKYFLTYALTTIFLLYLVDLMLHHIERDIIFSVISNN 156
           +IQ P T  F    LT +  +Y   +  HH+E  +   V S N
Sbjct: 367 IIQIPSTLSFFLEILTKLLEIYSYRISAHHVELLMALVVCSRN 409


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 124 RDIIFSVISNNGREKNVTCRSIPSA 198
           +D+I +V+S  G E  + CR  PSA
Sbjct: 133 KDLIITVVSAMGEEIALACRDAPSA 157


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 681 EDPNEFKVENTSPEKLKAELSAE-AVKIEKNVRKNDPTFLDM 559
           E+ N    +    EK+K+ +    A +IEK  ++ DP  +DM
Sbjct: 379 ENVNNHNADEQMDEKIKSLVEGNSAYEIEKGAQEPDPMSIDM 420


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 501 SSQRVAAPPWSPRSASLPSTCPRTSDRSCGRSS 599
           S +  AAP   P++A+  STC RT   S GR S
Sbjct: 139 SVKETAAPIKQPKNANSSSTCTRTPPTS-GRFS 170


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = -1

Query: 750 RETPQYEEDY*EKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI---EKNVRKN 580
           R + +  ++Y EK+ + LQ   +E+P+E   E    + L ++++   V+    +K +   
Sbjct: 92  RSSVKLIQEYSEKVHKKLQAKLLENPSETSPEIERLQVL-SQINLPEVRSKFHKKEIDYT 150

Query: 579 DPTFLDML 556
           +P FL ML
Sbjct: 151 NPVFLYML 158


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 31  IQSPLTKYFLTYALTTIFLLYLVDLMLHHIERDIIFS 141
           + + +  +FL+  L  +FLL+  D  +H    D IF+
Sbjct: 433 LSNRMESFFLSETLKYLFLLFDDDNPIHRSHHDFIFT 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,757
Number of Sequences: 5004
Number of extensions: 49771
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)