Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g15f
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    32   0.069
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   3.4  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.5  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   6.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.9  

>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = +1

Query: 424 DVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAEL 567
           +VKTL+ +LS +K+  K + R +++      N  KVE ++PE+L A L
Sbjct: 173 NVKTLDEYLSERKSAAKPVGRTVEKL----ENATKVEKSAPEELFASL 216


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -2

Query: 546 RARILDLKLVWVLNERLLKVAHYLFPNSLLHTEVSL*RLDVAITVRAIVIFF 391
           R RIL  K +  LNE LLKVA +   N L  T++ + + D   ++ A  +FF
Sbjct: 273 RDRILYAKFL-ELNESLLKVASFQQMNKLAVTKI-MKKFDKRTSLTAQPLFF 322


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 284 NERYPICGTYSVSANNMTATARISMKMKTP 373
           +E YP  G+ S+S++++ + + IS    TP
Sbjct: 69  SENYPYTGSKSLSSSSILSNSTISTSSSTP 98


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 463 TIRKKIMRDLQQAFVEDPNEFKVENT 540
           TIR   MRD  +  ++D N+F ++NT
Sbjct: 289 TIRHMHMRDAIEKLMKDFNQFCIDNT 314


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 292 IPHLRDIFGLSQQYDGNCKNFDEN 363
           IPH+R+++GL +  D     F +N
Sbjct: 425 IPHIRELYGLPRDGDSEIDFFFQN 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,989
Number of Sequences: 5004
Number of extensions: 44148
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)