Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g15f
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0456 + 16096467-16096585,16096687-16096965,16097087-160971...    30   1.1  
02_01_0191 - 1289442-1289875,1290073-1290154,1291046-1291090,129...    30   1.1  
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733...    28   4.6  
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471...    28   4.6  
01_06_0415 + 29185332-29185443,29186043-29186432,29186794-291871...    28   6.1  

>04_03_0456 +
           16096467-16096585,16096687-16096965,16097087-16097125,
           16110110-16110773
          Length = 366

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/73 (20%), Positives = 34/73 (46%)
 Frame = +3

Query: 9   LRTQQRVYVRAQHSAETKQKTKKKTVAFYNKNTCCAPNNKNRWILFDIHGYTRRRRDLKT 188
           L  ++++    +H+A+ K+  +K+++   N+    + +   RW+        +R R   T
Sbjct: 123 LTGREKLQAHREHAADLKRNKRKRSLQLENQRGIDSIDEDIRWLARGPIEVAKRHRAFNT 182

Query: 189 SGSYFPYRSHDEV 227
            G  F  + +D V
Sbjct: 183 RGYRFRSKRYDRV 195


>02_01_0191 -
           1289442-1289875,1290073-1290154,1291046-1291090,
           1291274-1291357,1291428-1291631,1291735-1291894,
           1292042-1292292
          Length = 419

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 251 PLSC*DHKHLIVRSIWKIAAGSFQISSSSRVTVNVKQN 138
           P  C D +++I R IWK+    + ++ S      ++QN
Sbjct: 207 PFFCSDREYIIARRIWKLGGAYYCVTKSLPALTRMQQN 244


>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
            24273725-24273826,24273912-24274088,24274193-24274398,
            24274491-24274575,24274641-24274798,24274873-24274948,
            24275117-24275245,24275313-24275457,24275561-24275691,
            24276183-24276335,24276447-24276636,24277006-24277139,
            24277248-24277406,24277659-24277964,24278040-24278216,
            24278446-24278529,24278592-24278822,24278913-24279002,
            24279090-24279211,24279293-24279448,24279477-24279635,
            24279705-24279765,24280004-24280138,24280384-24280471,
            24280548-24280620,24280883-24280994,24281691-24281711
          Length = 1327

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 424  DVKTLERHLSMK-KTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAE 576
            D K L +   MK K  RKK+  D+Q   V+  ++ + +    EKLK  LS E
Sbjct: 1028 DTKKLAKEWEMKVKAFRKKL-DDIQTNLVKHMDQIQKDAIDHEKLKETLSDE 1078


>01_04_0103 +
           16046012-16046018,16046214-16046366,16046908-16047158,
           16047509-16047631,16047818-16047931,16048153-16048315,
           16048867-16049462
          Length = 468

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 261 VRCHHDVRTSDTP 299
           V CHHD +TS+TP
Sbjct: 217 VHCHHDAKTSETP 229


>01_06_0415 +
           29185332-29185443,29186043-29186432,29186794-29187131,
           29187681-29187896
          Length = 351

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 525 KLVWVLNERLLKVAHYLFPNSLLHTEVSL*RLDVAITVRAIVIFFLLSLF-GGVFIFIEI 349
           +LVW +   +L VA  + P+  L   +S    D  +T   +++FF  +LF GGV IF+ +
Sbjct: 132 RLVWFVGPTIL-VAFLVLPSLYLRKVLSAVFEDSLLT-DFLILFFTEALFYGGVAIFVLL 189

Query: 348 L 346
           +
Sbjct: 190 I 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,715
Number of Sequences: 37544
Number of extensions: 282925
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)