Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g15f
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024850-1|AAF60860.2|  404|Caenorhabditis elegans Groundhog (he...    28   5.5  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z49937-8|CAD44113.1|  546|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z49867-4|CAD44109.1|  546|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z49126-7|CAD56566.1|  392|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49126-6|CAA88942.2|  530|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49126-4|CAD56565.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49066-3|CAD56555.1|  392|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49066-2|CAD56554.1|  530|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    27   9.5  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    27   9.5  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC024850-1|AAF60860.2|  404|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 16 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 260 SALSP*RQNERYPICGTYSVSANNMTATARISMKMKTPPKRLRRKK 397
           S  SP  + E  P+ G   +S  +   +  +   M+ PP++ RRK+
Sbjct: 169 SRYSPLARVEIPPVSGMSEISGISQRTSHSVGQTMQNPPRKRRRKQ 214


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +2

Query: 239 NKKVGAASALSP*RQNERYPICGTYSVSANNMTATARISMKMKTPPKRLRRKKMTIARTV 418
           +KKV A+SAL+  ++ E+ P C  ++V+A      A ++ K K+  K L+        T+
Sbjct: 618 SKKVTASSALNKNKEKEKSPPC--FAVTAAEAKGAAAVA-KSKSRKKSLKNTPSVPTSTI 674


>Z49937-8|CAD44113.1|  546|Caenorhabditis elegans Hypothetical
           protein C33D3.5 protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 219 REIYMENSCRKFSNLFFVACNRECQTKSSGFCYS 118
           RE+  +N+ R +  + F    R+ +TK+S FC S
Sbjct: 210 REVSTQNTPRVYQAVLFPTIPRKRKTKASNFCCS 243


>Z49867-4|CAD44109.1|  546|Caenorhabditis elegans Hypothetical
           protein C33D3.5 protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 219 REIYMENSCRKFSNLFFVACNRECQTKSSGFCYS 118
           RE+  +N+ R +  + F    R+ +TK+S FC S
Sbjct: 210 REVSTQNTPRVYQAVLFPTIPRKRKTKASNFCCS 243


>Z49126-7|CAD56566.1|  392|Caenorhabditis elegans Hypothetical
           protein DH11.5b protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   SPPHTAARVRTCATQCRNKTKNKKKNS 85
           SPP T  +  T A+Q +NK   KKK++
Sbjct: 209 SPPVTPTKKTTMASQIKNKIFGKKKDA 235


>Z49126-6|CAA88942.2|  530|Caenorhabditis elegans Hypothetical
           protein DH11.5a protein.
          Length = 530

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   SPPHTAARVRTCATQCRNKTKNKKKNS 85
           SPP T  +  T A+Q +NK   KKK++
Sbjct: 209 SPPVTPTKKTTMASQIKNKIFGKKKDA 235


>Z49126-4|CAD56565.1|  336|Caenorhabditis elegans Hypothetical
           protein DH11.5c protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   SPPHTAARVRTCATQCRNKTKNKKKNS 85
           SPP T  +  T A+Q +NK   KKK++
Sbjct: 153 SPPVTPTKKTTMASQIKNKIFGKKKDA 179


>Z49066-3|CAD56555.1|  392|Caenorhabditis elegans Hypothetical
           protein DH11.5b protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   SPPHTAARVRTCATQCRNKTKNKKKNS 85
           SPP T  +  T A+Q +NK   KKK++
Sbjct: 209 SPPVTPTKKTTMASQIKNKIFGKKKDA 235


>Z49066-2|CAD56554.1|  530|Caenorhabditis elegans Hypothetical
           protein DH11.5a protein.
          Length = 530

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   SPPHTAARVRTCATQCRNKTKNKKKNS 85
           SPP T  +  T A+Q +NK   KKK++
Sbjct: 209 SPPVTPTKKTTMASQIKNKIFGKKKDA 235


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoformb protein.
          Length = 1420

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -2

Query: 567  EFCLQFLRARI----LDLKLVWVLNERLLKVAHYLFPNSLLHTEV 445
            E+C Q    RI    +DLK+V      LL+   YL  + ++H ++
Sbjct: 1199 EYCSQGTLERICHGKMDLKMVRQYTNSLLRAVQYLHSHKIIHRDI 1243


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoforma protein.
          Length = 1418

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -2

Query: 567  EFCLQFLRARI----LDLKLVWVLNERLLKVAHYLFPNSLLHTEV 445
            E+C Q    RI    +DLK+V      LL+   YL  + ++H ++
Sbjct: 1199 EYCSQGTLERICHGKMDLKMVRQYTNSLLRAVQYLHSHKIIHRDI 1243


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 543 ARILDLKLVWVLNERLLKVAHYLFPNSLLHTEV 445
           AR  DL+L   L  R LK    L  N +L TE+
Sbjct: 790 ARTRDLRLDIKLRNRFLKAEQLLIKNGILKTEI 822


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,251
Number of Sequences: 27780
Number of extensions: 259152
Number of successful extensions: 849
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)