Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g11r
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.8  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    26   5.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   6.6  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 87  YLKIN--SAKSLNTSAAIFFIYHRHFFFV 167
           YLKIN  S KSLN S+  F   ++ FF+V
Sbjct: 796 YLKINTLSMKSLNNSSRKFLELYQCFFYV 824


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 488 LLSVIFFLDLVR--LKIYSWQLSLEFVFKICFLFCL 387
           LLS+++  DL    L  Y W + +  ++ + + FCL
Sbjct: 560 LLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCL 595


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 253 PNEKSIDKXXXXXXXLTFVYGNFLIRKNCTKKKCLW*IKN 134
           PN+ SI         ++ +YGNF    NC K+  +  I N
Sbjct: 302 PNQPSIQPFGILMMLVSTIYGNFKNLYNCIKRNTIGYIYN 341


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 450 KNLFLATFIGICVQNLFFILFNMVRK 373
           +++FLA FIGI     F +  +MVRK
Sbjct: 709 QSIFLAWFIGITFMFEFAVFISMVRK 734


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 367  WKFPNHIKQNKKQILNTN 420
            W FP+H  +N +QI +TN
Sbjct: 1014 WAFPHHKAENYEQISDTN 1031


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,474
Number of Sequences: 5004
Number of extensions: 64813
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)