Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g11r
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451...    30   2.3  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    29   3.9  

>12_01_0556 -
           4514686-4514868,4515168-4515290,4515381-4515617,
           4515747-4516358
          Length = 384

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 452 LKIYSWQLSLEFVFKICFLFCLIWFGN 372
           +K+ SW L ++FV  I  +   +WFGN
Sbjct: 217 MKLASWSLPVKFVDFILVVLAYLWFGN 243


>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
            16362211-16362398,16362564-16363942,16364024-16365047,
            16365171-16365566,16367484-16367999,16368085-16368226,
            16369409-16369553,16371351-16371432,16371851-16371895,
            16372018-16372140
          Length = 1762

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 497  FIYLLSVIFFLDLVRLKIYSWQLSLEFVFKICFLFCLIWF 378
            F+++L ++FFL +V   IY W  +   V  I +LF L+ F
Sbjct: 1275 FVFILMILFFLIVVDRIIYLWSFATGKV--IFYLFNLVLF 1312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,278
Number of Sequences: 37544
Number of extensions: 319298
Number of successful extensions: 531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)