Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11g11f
(621 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P28331 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 279 5e-74
UniRef50_Q43644 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 268 1e-70
UniRef50_Q9FGI6 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 265 7e-70
UniRef50_Q0V3E4 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 257 1e-67
UniRef50_A0EAY1 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 237 2e-61
UniRef50_Q4UK22 Cluster: NADH-quinone oxidoreductase subunit G; ... 235 5e-61
UniRef50_Q6E7A7 Cluster: NADH dehydrogenase subunit 11; n=5; Oom... 235 6e-61
UniRef50_Q9ZCF6 Cluster: NADH-quinone oxidoreductase subunit G; ... 231 1e-59
UniRef50_A0LDS1 Cluster: NADH-quinone oxidoreductase; n=1; Magne... 229 4e-59
UniRef50_Q9A6Y0 Cluster: NADH-quinone oxidoreductase; n=9; Alpha... 226 4e-58
UniRef50_Q23KA9 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 226 4e-58
UniRef50_Q1GTK5 Cluster: NADH-quinone oxidoreductase; n=9; Alpha... 225 7e-58
UniRef50_Q9MGB3 Cluster: NADH dehydrogenase subunit 11; n=1; Chr... 223 3e-57
UniRef50_Q3J834 Cluster: NADH-quinone oxidoreductase, chain G; n... 223 4e-57
UniRef50_Q9PGI9 Cluster: NADH-quinone oxidoreductase; n=12; Xant... 221 1e-56
UniRef50_Q82TU9 Cluster: NADH-quinone oxidoreductase; n=4; Betap... 221 1e-56
UniRef50_A4BTQ8 Cluster: NADH-quinone oxidoreductase; n=3; Ectot... 219 6e-56
UniRef50_UPI0000DAE3E1 Cluster: hypothetical protein Rgryl_01000... 218 8e-56
UniRef50_Q9G8T0 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 218 1e-55
UniRef50_Q6G394 Cluster: NADH-quinone oxidoreductase; n=25; Alph... 216 3e-55
UniRef50_P29915 Cluster: NADH-quinone oxidoreductase chain 3; n=... 216 4e-55
UniRef50_A7DLV2 Cluster: NADH-quinone oxidoreductase, chain G; n... 213 3e-54
UniRef50_Q37373 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 212 7e-54
UniRef50_Q9G8R8 Cluster: NADH dehydrogenase subunit 11; n=1; Nae... 210 3e-53
UniRef50_Q8XXQ7 Cluster: NADH-quinone oxidoreductase; n=63; Prot... 208 6e-53
UniRef50_Q83BR1 Cluster: NADH-quinone oxidoreductase; n=3; Coxie... 208 1e-52
UniRef50_Q5WT26 Cluster: NADH-quinone oxidoreductase; n=4; Legio... 208 1e-52
UniRef50_A1KRS9 Cluster: NADH-quinone oxidoreductase; n=4; Neiss... 208 1e-52
UniRef50_Q0EZQ3 Cluster: NADH-quinone oxidoreductase; n=1; Marip... 207 1e-52
UniRef50_Q3S282 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 205 6e-52
UniRef50_A1AVR8 Cluster: NADH-quinone oxidoreductase; n=2; sulfu... 202 5e-51
UniRef50_Q9G927 Cluster: NADH dehydrogenase subunit 11; n=1; Och... 198 7e-50
UniRef50_Q0BK57 Cluster: NADH-quinone oxidoreductase; n=11; Fran... 198 9e-50
UniRef50_A6GS81 Cluster: NADH-quinone oxidoreductase; n=1; Limno... 197 2e-49
UniRef50_Q34312 Cluster: NADH-ubiquinone oxidoreductase 75 kDa s... 197 2e-49
UniRef50_Q67P16 Cluster: NADH-quinone oxidoreductase; n=1; Symbi... 174 2e-42
UniRef50_Q02CT7 Cluster: NADH-quinone oxidoreductase; n=1; Solib... 169 6e-41
UniRef50_Q6MDR0 Cluster: NADH-quinone oxidoreductase; n=1; Candi... 168 8e-41
UniRef50_Q4QDP1 Cluster: NADH:ubiquinone oxidoreductase 78 Kd su... 167 1e-40
UniRef50_P56914 Cluster: NADH-quinone oxidoreductase subunit G 2... 165 1e-39
UniRef50_A7H9V6 Cluster: Ferredoxin; n=4; Cystobacterineae|Rep: ... 164 1e-39
UniRef50_Q9XAR0 Cluster: NADH-quinone oxidoreductase subunit G; ... 160 2e-38
UniRef50_Q8F9N1 Cluster: NADH-quinone oxidoreductase; n=4; Lepto... 158 1e-37
UniRef50_Q5YWD3 Cluster: NADH-quinone oxidoreductase; n=1; Nocar... 156 5e-37
UniRef50_A7BBX3 Cluster: Putative uncharacterized protein; n=1; ... 156 5e-37
UniRef50_A7CUF9 Cluster: Ferredoxin; n=1; Opitutaceae bacterium ... 153 2e-36
UniRef50_Q1IS39 Cluster: NADH-quinone oxidoreductase; n=1; Acido... 153 4e-36
UniRef50_A1ALP5 Cluster: Ferredoxin; n=1; Pelobacter propionicus... 152 7e-36
UniRef50_Q74GA2 Cluster: NADH dehydrogenase I, G subunit, putati... 151 1e-35
UniRef50_A5FKK1 Cluster: Ferredoxin; n=3; Bacteroidetes|Rep: Fer... 151 1e-35
UniRef50_A6FCN0 Cluster: NADH-quinone oxidoreductase; n=1; Morit... 149 4e-35
UniRef50_A6H1Q7 Cluster: NADH dehydrogenase I, G subunit, N-term... 148 1e-34
UniRef50_A0RMD4 Cluster: NADH-quinone oxidoreductase, g subunit;... 147 2e-34
UniRef50_O66748 Cluster: NADH dehydrogenase I chain G; n=1; Aqui... 145 7e-34
UniRef50_Q4T4V2 Cluster: Chromosome 3 SCAF9531, whole genome sho... 144 1e-33
UniRef50_A4LXN6 Cluster: NADH-quinone oxidoreductase; n=1; Geoba... 144 1e-33
UniRef50_Q1ZRW9 Cluster: NADH-quinone oxidoreductase; n=2; Vibri... 144 2e-33
UniRef50_A3ERJ1 Cluster: NADH-quinone oxidoreductase; n=2; Lepto... 142 5e-33
UniRef50_Q3A822 Cluster: NADH dehydrogenase I chain G; n=1; Pelo... 142 8e-33
UniRef50_A0LJN7 Cluster: NADH-quinone oxidoreductase; n=1; Syntr... 141 1e-32
UniRef50_Q746S9 Cluster: NADH-quinone oxidoreductase; n=5; Geoba... 140 2e-32
UniRef50_A5UVG3 Cluster: NADH-quinone oxidoreductase; n=5; Chlor... 136 4e-31
UniRef50_A0WB84 Cluster: Molybdopterin oxidoreductase; n=1; Geob... 135 7e-31
UniRef50_Q6MIR8 Cluster: NADH dehydrogenase I chain G; n=1; Bdel... 130 2e-29
UniRef50_Q9RU93 Cluster: NADH-quinone oxidoreductase; n=2; Deino... 128 8e-29
UniRef50_Q2YAA0 Cluster: NADH-quinone oxidoreductase; n=2; Bacte... 127 2e-28
UniRef50_A6TVG2 Cluster: Molybdopterin oxidoreductase Fe4S4 regi... 126 3e-28
UniRef50_Q56223 Cluster: NADH-quinone oxidoreductase subunit 3; ... 126 4e-28
UniRef50_A5FSK7 Cluster: Hydrogenase, Fe-only; n=9; Bacteria|Rep... 125 7e-28
UniRef50_Q63RZ1 Cluster: NAD-dependent formate dehydrogenase alp... 124 1e-27
UniRef50_Q89AU1 Cluster: NADH-quinone oxidoreductase subunit G; ... 124 2e-27
UniRef50_Q1K3H6 Cluster: Molybdopterin oxidoreductase; n=1; Desu... 123 3e-27
UniRef50_Q2RHA1 Cluster: Ferredoxin; n=2; Clostridia|Rep: Ferred... 122 5e-27
UniRef50_Q608Y2 Cluster: NADH-quinone oxidoreductase; n=5; Bacte... 122 7e-27
UniRef50_A4U8S2 Cluster: NADH-quinone oxidoreductase; n=1; Theon... 121 2e-26
UniRef50_Q67JF9 Cluster: Iron hydrogenase; n=31; Bacteria|Rep: I... 120 2e-26
UniRef50_UPI00015BCE9F Cluster: UPI00015BCE9F related cluster; n... 120 4e-26
UniRef50_Q28P87 Cluster: Formate dehydrogenase alpha subunit; n=... 119 5e-26
UniRef50_Q3AE47 Cluster: NAD-dependent formate dehydrogenase, al... 117 2e-25
UniRef50_Q8ZDL2 Cluster: NADH-quinone oxidoreductase subunit G; ... 117 3e-25
UniRef50_Q6N1Z3 Cluster: NADH-ubiquinone dehydrogenase chain G p... 116 3e-25
UniRef50_Q2S5I6 Cluster: NADH dehydrogenase i, g subunit; n=2; S... 116 5e-25
UniRef50_Q93SF1 Cluster: FdhB-II protein; n=4; Bacteria|Rep: Fdh... 116 5e-25
UniRef50_A6Q1P9 Cluster: NADH-quinone oxidoreductase, chain G; n... 115 8e-25
UniRef50_Q1PWG5 Cluster: Similar to molybdopterin oxidoreductase... 115 1e-24
UniRef50_A0J5R9 Cluster: NADH-quinone oxidoreductase, chain G pr... 114 1e-24
UniRef50_Q4FU59 Cluster: NADH-quinone oxidoreductase; n=3; Psych... 114 2e-24
UniRef50_Q057X0 Cluster: NADH-quinone oxidoreductase; n=1; Buchn... 111 1e-23
UniRef50_Q835I7 Cluster: NAD-dependent formate dehydrogenase, al... 111 1e-23
UniRef50_P74022 Cluster: Hydrogenase subunit; n=9; Bacteria|Rep:... 110 3e-23
UniRef50_Q8YYT4 Cluster: Hydrogenase chain U; n=22; Bacteria|Rep... 109 7e-23
UniRef50_Q2AG82 Cluster: Ferredoxin:4Fe-4S ferredoxin, iron-sulf... 108 1e-22
UniRef50_Q9WY44 Cluster: NADP-reducing hydrogenase, subunit D, p... 106 4e-22
UniRef50_Q8TFP2 Cluster: Hydrogenase; n=4; Neocallimastigaceae|R... 105 9e-22
UniRef50_Q24QD4 Cluster: NADH dehydrogenase I chain G; n=8; Clos... 104 1e-21
UniRef50_Q7VRV7 Cluster: NADH-quinone oxidoreductase subunit G; ... 104 1e-21
UniRef50_O52683 Cluster: Fe-hydrogenase alpha subunit; n=3; Ther... 103 5e-21
UniRef50_A0LK82 Cluster: Molybdopterin oxidoreductase; n=1; Synt... 103 5e-21
UniRef50_Q7MA46 Cluster: NADH-UBIQUINONE OXIDOREDUCTASE, NQO3 SU... 101 1e-20
UniRef50_A4J529 Cluster: Hydrogenases, Fe-only; n=3; Clostridial... 101 2e-20
UniRef50_Q2LS99 Cluster: Formate dehydrogenase, iron-sulfur subu... 98 1e-19
UniRef50_Q604G7 Cluster: Formate dehydrogenase, alpha subunit; n... 95 9e-19
UniRef50_Q30PI4 Cluster: Ferredoxin; n=1; Thiomicrospira denitri... 95 9e-19
UniRef50_A6Q1Q0 Cluster: NADH-quinone oxidoreductase, chain G; n... 95 9e-19
UniRef50_Q5DUT3 Cluster: Putative NADH-ubiquinone oxidoreductase... 95 1e-18
UniRef50_A0LP28 Cluster: Formate dehydrogenase, alpha subunit; n... 95 2e-18
UniRef50_A6LZW8 Cluster: Ferredoxin; n=1; Clostridium beijerinck... 93 4e-18
UniRef50_Q1FFT8 Cluster: Ferredoxin:4Fe-4S ferredoxin, iron-sulf... 93 5e-18
UniRef50_A6PPY6 Cluster: Hydrogenase, Fe-only; n=1; Victivallis ... 93 6e-18
UniRef50_Q8ABI6 Cluster: NADH:ubiquinone oxidoreductase subunit;... 91 1e-17
UniRef50_Q7VFS8 Cluster: Donor-ubiquinone reductase I; n=1; Heli... 91 2e-17
UniRef50_A6GJI1 Cluster: Formate dehydrogenase, alpha subunit; n... 91 2e-17
UniRef50_A5ZW19 Cluster: Putative uncharacterized protein; n=1; ... 91 2e-17
UniRef50_Q6NDH4 Cluster: Hydrogenase gamma-fused hydrogenase lar... 90 3e-17
UniRef50_Q5P4U4 Cluster: Formate dehydrogenase alpha subunit,mol... 89 1e-16
UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep: Hydro... 86 6e-16
UniRef50_Q73MB6 Cluster: Fe-hydrogenase; n=17; Bacteria|Rep: Fe-... 85 2e-15
UniRef50_Q2SQP6 Cluster: Probable hydrogen dehydrogenase; n=2; P... 85 2e-15
UniRef50_A7GW64 Cluster: Elongation factor Tu; n=3; Campylobacte... 84 3e-15
UniRef50_Q603S5 Cluster: NAD-reducing hydrogenase, gamma subunit... 83 4e-15
UniRef50_Q3ZXP6 Cluster: Hydrogenase subunit HymC; n=9; Bacteria... 83 4e-15
UniRef50_A4XH60 Cluster: Molybdopterin oxidoreductase; n=2; Synt... 83 7e-15
UniRef50_P22318 Cluster: NAD-reducing hydrogenase hoxS subunit g... 83 7e-15
UniRef50_O25856 Cluster: NADH-ubiquinone oxidoreductase, NQO3 su... 81 2e-14
UniRef50_A2FCW4 Cluster: 64kDa iron hydrogenase, putative; n=6; ... 81 2e-14
UniRef50_Q4FMU1 Cluster: Formate dehydrogenase Alpha subunit; n=... 81 3e-14
UniRef50_Q2W1S7 Cluster: NAD-reducing hydrogenase diaphorase moi... 80 4e-14
UniRef50_Q4AMU3 Cluster: Ferredoxin:FAD-dependent pyridine nucle... 80 5e-14
UniRef50_Q5V639 Cluster: Formate dehydrogenase alpha subunit; n=... 79 1e-13
UniRef50_A1HDX4 Cluster: NAD-dependent formate dehydrogenase, al... 77 3e-13
UniRef50_Q1EYP6 Cluster: Ferredoxin:FAD-dependent pyridine nucle... 75 1e-12
UniRef50_Q4JBU3 Cluster: Formate dehydrogenase alpha chain; n=2;... 75 1e-12
UniRef50_A0B7M9 Cluster: Formate dehydrogenase, alpha subunit; n... 74 2e-12
UniRef50_Q2FEI5 Cluster: Putative formate dehydrogenase SAUSA300... 74 2e-12
UniRef50_O27595 Cluster: Formate dehydrogenase, alpha subunit ho... 74 3e-12
UniRef50_Q2WB01 Cluster: FdhA-II protein; n=4; Alphaproteobacter... 72 1e-11
UniRef50_Q0AWA6 Cluster: 2Fe-2S iron-sulfur cluster domain with ... 71 2e-11
UniRef50_A7H5S5 Cluster: NADH-quinone oxidoreductase, G subunit;... 71 3e-11
UniRef50_Q82M24 Cluster: Putative NADH dehydrogenase I chain G; ... 69 7e-11
UniRef50_A1WBF9 Cluster: Formate dehydrogenase, alpha subunit; n... 69 9e-11
UniRef50_Q2LYA8 Cluster: 2Fe-2S iron-sulfur cluster domain with ... 68 2e-10
UniRef50_Q1NVC6 Cluster: Ferredoxin:FAD-dependent pyridine nucle... 68 2e-10
UniRef50_A0K165 Cluster: Formate dehydrogenase, alpha subunit; n... 68 2e-10
UniRef50_Q1PW50 Cluster: Similar to NAD(P) oxidoreductase, FAD-c... 66 6e-10
UniRef50_Q18XD7 Cluster: Hydrogenase large subunit-like; n=4; Cl... 65 1e-09
UniRef50_Q3A637 Cluster: Putative formate dehydrogenase; n=1; Pe... 64 2e-09
UniRef50_Q3Z8I1 Cluster: [Fe] hydrogenase, HymC subunit, putativ... 64 3e-09
UniRef50_Q68VL2 Cluster: BzdV; n=3; Azoarcus|Rep: BzdV - Azoarcu... 61 2e-08
UniRef50_Q565Z3 Cluster: Putative dehydrogenase; n=1; uncultured... 60 3e-08
UniRef50_Q4UWQ3 Cluster: Formate dehydrogenase related protein; ... 59 7e-08
UniRef50_A6PMG6 Cluster: Ferredoxin; n=1; Victivallis vadensis A... 58 2e-07
UniRef50_Q0HRS3 Cluster: Formate dehydrogenase, alpha subunit; n... 58 2e-07
UniRef50_Q5JIQ3 Cluster: Glutamate synthase beta chain-related o... 56 9e-07
UniRef50_A1I854 Cluster: Molybdopterin oxidoreductase Fe4s4 regi... 54 3e-06
UniRef50_A2DJB5 Cluster: Iron only hydrogenase large subunit, C-... 54 4e-06
UniRef50_A3QB33 Cluster: Formate dehydrogenase, alpha subunit; n... 51 3e-05
UniRef50_Q2FP96 Cluster: Ferredoxin; n=1; Methanospirillum hunga... 50 6e-05
UniRef50_P29166 Cluster: Iron hydrogenase 1; n=22; Clostridium|R... 50 6e-05
UniRef50_A5N6F9 Cluster: NADH dehydrogenase-related protein; n=2... 47 4e-04
UniRef50_A2DRY8 Cluster: Iron only hydrogenase large subunit, C-... 46 0.001
UniRef50_A2DJT6 Cluster: Iron only hydrogenase large subunit, C-... 44 0.003
UniRef50_A6D5X2 Cluster: Putative formate dehydrogenase, alphasu... 42 0.009
UniRef50_A0GGR6 Cluster: Putative uncharacterized protein; n=6; ... 41 0.027
UniRef50_Q2BI72 Cluster: Putative uncharacterized protein; n=1; ... 38 0.19
UniRef50_A6GES6 Cluster: Ferredoxin / FAD-dependent pyridine nuc... 37 0.45
UniRef50_A2E4U8 Cluster: Iron only hydrogenase large subunit, C-... 36 0.59
UniRef50_Q92YC9 Cluster: Putative oxidoreductase; n=1; Sinorhizo... 34 2.4
UniRef50_Q21IR3 Cluster: CheW-like protein; n=1; Saccharophagus ... 34 2.4
UniRef50_Q987J5 Cluster: Mlr7027 protein; n=5; Proteobacteria|Re... 34 3.1
UniRef50_Q7NH04 Cluster: Gll2733 protein; n=1; Gloeobacter viola... 34 3.1
UniRef50_Q3C1E0 Cluster: Reductase component of terephthalate 1,... 34 3.1
UniRef50_Q7M9E9 Cluster: Sensor protein; n=1; Wolinella succinog... 33 4.2
UniRef50_A0X1Q2 Cluster: Ferredoxin; n=4; Gammaproteobacteria|Re... 33 4.2
UniRef50_Q7NCF8 Cluster: Tetrapyrrole methylase family protein; ... 33 5.5
UniRef50_Q3SLY2 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_A6PSQ4 Cluster: N-(5'-phosphoribosyl)anthranilate isome... 33 7.3
UniRef50_A1S7F6 Cluster: Flavodoxin reductase (Ferredoxin-NADPH ... 33 7.3
UniRef50_A6GSY7 Cluster: Two component transcriptional regulator... 32 9.6
UniRef50_A6GAG4 Cluster: RTX toxins and related Ca2+-binding pro... 32 9.6
UniRef50_A5FXZ0 Cluster: Ferredoxin; n=1; Acidiphilium cryptum J... 32 9.6
UniRef50_A3Y6P5 Cluster: Putative uncharacterized protein; n=1; ... 32 9.6
UniRef50_A3ULR6 Cluster: Putative uncharacterized protein; n=1; ... 32 9.6
UniRef50_Q4XPF3 Cluster: Putative uncharacterized protein; n=1; ... 32 9.6
UniRef50_Q2NEH4 Cluster: Glutamyl-tRNA reductase; n=1; Methanosp... 32 9.6
UniRef50_Q18EI2 Cluster: ISH4-type transposase; n=2; Halobacteri... 32 9.6
>UniRef50_P28331 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit, mitochondrial precursor; n=111; cellular
organisms|Rep: NADH-ubiquinone oxidoreductase 75 kDa
subunit, mitochondrial precursor - Homo sapiens (Human)
Length = 727
Score = 279 bits (683), Expect = 5e-74
Identities = 134/200 (67%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Frame = +1
Query: 25 MLRQPLSRALA-LTSPVRAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAA 201
MLR P+ +AL L+ + T A + +EVF+D Q V V PGTTVLQA
Sbjct: 1 MLRIPVRKALVGLSKSPKGCVRTTATAASNL------IEVFVDGQSVMVEPGTTVLQACE 54
Query: 202 QVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKARE 381
+VG++IPRFCYHERL+VAGNCRMCLVE+EK+PK VAACAMPVMKG + TNS+ ++KARE
Sbjct: 55 KVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKARE 114
Query: 382 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIK 561
GVMEFLL NHPLDCPICDQGGECDLQDQSM FG+D+SRF + GKRAVEDK++GPL+K
Sbjct: 115 GVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLE----GKRAVEDKNIGPLVK 170
Query: 562 TIMTRCIHCTRCIRFASEVA 621
TIMTRCI CTRCIRFASE+A
Sbjct: 171 TIMTRCIQCTRCIRFASEIA 190
>UniRef50_Q43644 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit, mitochondrial precursor; n=44; cellular
organisms|Rep: NADH-ubiquinone oxidoreductase 75 kDa
subunit, mitochondrial precursor - Solanum tuberosum
(Potato)
Length = 738
Score = 268 bits (656), Expect = 1e-70
Identities = 120/167 (71%), Positives = 143/167 (85%), Gaps = 1/167 (0%)
Frame = +1
Query: 124 PEKV-EVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPK 300
PE V EVF+D PV + G TVLQA GV+IPRFCYH RL++AGNCRMCLVEVEKSPK
Sbjct: 64 PEDVIEVFVDGYPVKIPKGMTVLQACEIAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPK 123
Query: 301 PVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 480
PVA+CAMP + GM++KT++ + +KAREGVMEFLL+NHPLDCPICDQGGECDLQDQSMAFG
Sbjct: 124 PVASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFG 183
Query: 481 SDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
SD+ RFT++ KR+V DK++GPL+KT+MTRCI CTRC+RFASEVA
Sbjct: 184 SDRGRFTEM----KRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVA 226
>UniRef50_Q9FGI6 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit, mitochondrial precursor; n=8;
Viridiplantae|Rep: NADH-ubiquinone oxidoreductase 75 kDa
subunit, mitochondrial precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 748
Score = 265 bits (649), Expect = 7e-70
Identities = 117/165 (70%), Positives = 141/165 (85%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
+ +EVF+D V V G TVLQA GV+IPRFCYH RL++AGNCRMCLVEVEKSPKPV
Sbjct: 72 DAIEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPV 131
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
A+CAMP + GM++KT++ + +KAREGVMEFLL+NHPLDCPICDQGGECDLQDQSMAFGSD
Sbjct: 132 ASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSD 191
Query: 487 KSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+ RFT++ KR+V DK++GPL+KT+MTRCI CTRC+RFASEVA
Sbjct: 192 RGRFTEM----KRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVA 232
>UniRef50_Q0V3E4 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit; n=2; Ascomycota|Rep: NADH-ubiquinone
oxidoreductase 75 kDa subunit - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 692
Score = 257 bits (630), Expect = 1e-67
Identities = 121/199 (60%), Positives = 151/199 (75%)
Frame = +1
Query: 25 MLRQPLSRALALTSPVRAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQ 204
MLRQ L R+L + +RA +R FA +P ++E+ ID + V + G ++QA +
Sbjct: 1 MLRQHLVRSLKRPA-LRAGFNGSRAFAASA-TRPAEIELTIDGKKVQIEAGAALIQACEK 58
Query: 205 VGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREG 384
G IPR+CYHE+L +AG+CRMCLVEVE++PKPVA+CA PV GM VKT+S L KAREG
Sbjct: 59 AGATIPRYCYHEKLMIAGSCRMCLVEVERAPKPVASCAWPVQPGMVVKTDSPLVHKAREG 118
Query: 385 VMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKT 564
VMEFLL NHPLDCPICDQGGECDLQDQSM +G D+ RF +I GKRAVEDK+VGPLIKT
Sbjct: 119 VMEFLLANHPLDCPICDQGGECDLQDQSMRYGGDRGRFHEI--EGKRAVEDKNVGPLIKT 176
Query: 565 IMTRCIHCTRCIRFASEVA 621
M RCIHCTRC+RF++++A
Sbjct: 177 SMNRCIHCTRCVRFSNDIA 195
>UniRef50_A0EAY1 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit; n=3; Paramecium tetraurelia|Rep:
NADH-ubiquinone oxidoreductase 75 kDa subunit -
Paramecium tetraurelia
Length = 712
Score = 237 bits (580), Expect = 2e-61
Identities = 114/176 (64%), Positives = 125/176 (71%)
Frame = +1
Query: 94 RRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMC 273
R+ Q +E+FIDD P V P T+ QA GV IPRFCYHERLAVAGNCRMC
Sbjct: 14 RKQLSAFSTQQSLIEIFIDDVPHKVDPSATIFQACYSAGVIIPRFCYHERLAVAGNCRMC 73
Query: 274 LVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECD 453
LVEVEKSPKPVAACA V GMR+ T S+ TR AR GVMEF+L NHPLDCPICDQGGECD
Sbjct: 74 LVEVEKSPKPVAACAAQVAPGMRILTKSEKTRIARGGVMEFMLANHPLDCPICDQGGECD 133
Query: 454 LQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
LQD S +G SR H KRAVEDK+ GPL+ T M RCIHCTRCIRF+ E A
Sbjct: 134 LQDISEQYGYGDSR----HNEYKRAVEDKNFGPLVATSMNRCIHCTRCIRFSDEYA 185
>UniRef50_Q4UK22 Cluster: NADH-quinone oxidoreductase subunit G;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase subunit G
- Rickettsia felis (Rickettsia azadi)
Length = 671
Score = 235 bits (576), Expect = 5e-61
Identities = 103/163 (63%), Positives = 129/163 (79%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+++ ID + V G+TV QA Q G EIP FCYHERL +AGNCRMCLVE+EKSPKP+A+
Sbjct: 2 IKLNIDGSEIEVSEGSTVYQACTQAGKEIPHFCYHERLKIAGNCRMCLVEMEKSPKPIAS 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CAMPV GM + T++ + +KAREGVMEFLL+NHPLDCPICDQGGECDLQDQ+ +G +
Sbjct: 62 CAMPVSNGMVIHTDTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAFRYGKGTN 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
RF + KR+++DK +GPLIKT MTRCI CTRCIRFA+++A
Sbjct: 122 RFHE----NKRSIKDKYMGPLIKTAMTRCIQCTRCIRFANDIA 160
>UniRef50_Q6E7A7 Cluster: NADH dehydrogenase subunit 11; n=5;
Oomycetes|Rep: NADH dehydrogenase subunit 11 -
Saprolegnia ferax
Length = 673
Score = 235 bits (575), Expect = 6e-61
Identities = 101/162 (62%), Positives = 128/162 (79%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + I+ +HV TVLQA + ++IP+FC+ E L +AGNCRMCLVE++ SPKPVA+
Sbjct: 2 IPIIINGVKMHVKKNITVLQACNSLNIQIPKFCFQENLKIAGNCRMCLVEIKNSPKPVAS 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CAMPVM M + TN+ L +KARE V+EF+L+NHPLDCPICDQ ECDLQDQ++ FGSDKS
Sbjct: 62 CAMPVMPNMEIFTNTPLVQKARESVLEFILINHPLDCPICDQASECDLQDQTLIFGSDKS 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
RF F+ KR+VEDK++GP IKTIMTRCIHCTRC+RFA E+
Sbjct: 122 RF---FFNKKRSVEDKNIGPFIKTIMTRCIHCTRCVRFADEI 160
>UniRef50_Q9ZCF6 Cluster: NADH-quinone oxidoreductase subunit G;
n=7; Alphaproteobacteria|Rep: NADH-quinone
oxidoreductase subunit G - Rickettsia prowazekii
Length = 675
Score = 231 bits (565), Expect = 1e-59
Identities = 101/163 (61%), Positives = 127/163 (77%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+++ ID + + G+TV QA Q G EIP FCYH RL +AGNCRMCLVE+EKS KPVA+
Sbjct: 2 IKLIIDGSEIEISEGSTVYQACIQAGKEIPHFCYHARLKIAGNCRMCLVEIEKSQKPVAS 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CAMPV KGM + T++ + +KAREGVMEFLL+NHPLDCPICDQGGECDLQDQ+ +G +
Sbjct: 62 CAMPVSKGMVIHTDTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAFRYGKGTN 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
RF + KR+++DK +GPLIKT MTRCI CTRCIR A+++A
Sbjct: 122 RFHE----NKRSIKDKYMGPLIKTAMTRCIQCTRCIRLANDIA 160
>UniRef50_A0LDS1 Cluster: NADH-quinone oxidoreductase; n=1;
Magnetococcus sp. MC-1|Rep: NADH-quinone oxidoreductase
- Magnetococcus sp. (strain MC-1)
Length = 797
Score = 229 bits (560), Expect = 4e-59
Identities = 100/161 (62%), Positives = 128/161 (79%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACA 318
+ ID + + V PGTT+++AA ++GV IP FCYH +L+VAGNCRMCLVEV K P+PV ACA
Sbjct: 4 LIIDGKEISVQPGTTIMEAAKKLGVYIPHFCYHPKLSVAGNCRMCLVEVVKMPRPVVACA 63
Query: 319 MPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRF 498
MPV GM VKT+SD+ AR+GVMEFLL+NHPLDCP+CDQGG CDLQD +M +G D+SR+
Sbjct: 64 MPVGDGMEVKTHSDMVMAARQGVMEFLLINHPLDCPVCDQGGACDLQDLAMKYGPDRSRY 123
Query: 499 TDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+I KR + D+GP+I+T M RCIHCTRCIRF++E+A
Sbjct: 124 IEI----KRQPNNLDLGPIIETEMDRCIHCTRCIRFSTEIA 160
>UniRef50_Q9A6Y0 Cluster: NADH-quinone oxidoreductase; n=9;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 686
Score = 226 bits (552), Expect = 4e-58
Identities = 101/155 (65%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Frame = +1
Query: 160 VHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-KPVAACAMPVMKG 336
V PG TVLQ A G EIPRFCYHERL++AGNCRMCLVEV+ P KP A+CA+P +G
Sbjct: 11 VEFEPGMTVLQVAELAGEEIPRFCYHERLSIAGNCRMCLVEVKPGPPKPQASCALPAAEG 70
Query: 337 MRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFS 516
+ T + + +KAREGVMEFLL+NHPLDCPICDQGGECDLQDQ++ +G D SR+ +
Sbjct: 71 QEIFTKTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAVGYGRDDSRYEE---- 126
Query: 517 GKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
KRAVE+K +GPLIKT+MTRCI CTRC+RF +EVA
Sbjct: 127 NKRAVEEKSMGPLIKTVMTRCIQCTRCVRFITEVA 161
>UniRef50_Q23KA9 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit, mitochondrial, putative; n=1; Tetrahymena
thermophila SB210|Rep: NADH-ubiquinone oxidoreductase 75
kDa subunit, mitochondrial, putative - Tetrahymena
thermophila SB210
Length = 771
Score = 226 bits (552), Expect = 4e-58
Identities = 104/168 (61%), Positives = 125/168 (74%)
Frame = +1
Query: 115 QAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKS 294
Q +++E+FID +P V T+ QA + GV +PRFCYHERL+VAGNCRMCLVEVE
Sbjct: 27 QVLNKQIEIFIDGKPAKVDDSYTIFQACYENGVIVPRFCYHERLSVAGNCRMCLVEVENV 86
Query: 295 PKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMA 474
PKPVAACA V+ GM++KT S+ TR R VMEFLL NHPLDCPICDQGGECDLQD S
Sbjct: 87 PKPVAACASQVVPGMKIKTKSEKTRIHRGNVMEFLLANHPLDCPICDQGGECDLQDISSV 146
Query: 475 FGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+G SR+ + KRAVEDK+ GPL+ T M RCIHCTRC+RFA++V
Sbjct: 147 YGYGISRYNEY----KRAVEDKNYGPLVATSMNRCIHCTRCVRFATQV 190
>UniRef50_Q1GTK5 Cluster: NADH-quinone oxidoreductase; n=9;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase -
Sphingopyxis alaskensis (Sphingomonas alaskensis)
Length = 670
Score = 225 bits (550), Expect = 7e-58
Identities = 102/163 (62%), Positives = 126/163 (77%), Gaps = 1/163 (0%)
Frame = +1
Query: 136 EVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-KPVAA 312
+V +D + V G TVLQA G EIPRFCYHERL++AGNCRMCLVEV P KP A+
Sbjct: 3 KVTVDGVELDVPQGATVLQACELAGKEIPRFCYHERLSIAGNCRMCLVEVAPGPPKPQAS 62
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA+P +G +KT+S + +KAREGVMEFLL+NHPLDCPICDQGGECDLQDQS+A+G +
Sbjct: 63 CALPTAEGQIIKTDSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQSIAYGRGAT 122
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
R+ + KRAV +K +GP++KT+MTRCI CTRC+RFA EVA
Sbjct: 123 RYDE----NKRAVTEKYMGPIVKTVMTRCIQCTRCVRFAEEVA 161
>UniRef50_Q9MGB3 Cluster: NADH dehydrogenase subunit 11; n=1;
Chrysodidymus synuroideus|Rep: NADH dehydrogenase
subunit 11 - Chrysodidymus synuroideus
Length = 673
Score = 223 bits (545), Expect = 3e-57
Identities = 101/149 (67%), Positives = 117/149 (78%)
Frame = +1
Query: 172 PGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKT 351
P +VL+A +G+ +PRFCYHE L+VAGNCRMCLVE+EKSPKPV ACAMPV+ M + T
Sbjct: 15 PNVSVLEACQYIGIYLPRFCYHEILSVAGNCRMCLVEIEKSPKPVVACAMPVVNNMVILT 74
Query: 352 NSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAV 531
NS L +KARE V+E LL+NHPLDCPICDQGGECDLQDQ GSD SRF F KR V
Sbjct: 75 NSPLVKKARENVLELLLINHPLDCPICDQGGECDLQDQIQFAGSDFSRF----FKNKRIV 130
Query: 532 EDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
EDK +G IKTIMTRCIHCTRC+RF+ E+
Sbjct: 131 EDKILGLSIKTIMTRCIHCTRCVRFSEEL 159
>UniRef50_Q3J834 Cluster: NADH-quinone oxidoreductase, chain G; n=2;
Gammaproteobacteria|Rep: NADH-quinone oxidoreductase,
chain G - Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848)
Length = 797
Score = 223 bits (544), Expect = 4e-57
Identities = 98/167 (58%), Positives = 129/167 (77%)
Frame = +1
Query: 121 QPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPK 300
+P V++ ID + V G +++ A ++GV+IPRFCYH+ L++A NCRMCLVEVEKS K
Sbjct: 2 KPGMVKIEIDGTELQVKAGKMLIEVADEIGVDIPRFCYHKHLSIAANCRMCLVEVEKSRK 61
Query: 301 PVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 480
P+ ACA PV GM++ T+S A++GVMEFLL+NHPLDCPICDQGGEC+LQD +M +G
Sbjct: 62 PLPACATPVADGMKIFTSSPRAIAAQKGVMEFLLINHPLDCPICDQGGECELQDLAMGYG 121
Query: 481 SDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+D SRFT+ KR V+DK++GPLIKT +TRCIHCTRC+RF E+A
Sbjct: 122 NDISRFTE----RKRVVKDKNIGPLIKTDLTRCIHCTRCVRFGQEIA 164
>UniRef50_Q9PGI9 Cluster: NADH-quinone oxidoreductase; n=12;
Xanthomonadaceae|Rep: NADH-quinone oxidoreductase -
Xylella fastidiosa
Length = 744
Score = 221 bits (539), Expect = 1e-56
Identities = 96/169 (56%), Positives = 127/169 (75%)
Frame = +1
Query: 115 QAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKS 294
+ +P++V + ID Q + V G+ ++QAA G+ IPRFCYHE+L +A NCRMCLV+VEK
Sbjct: 9 EVRPDRVTIEIDGQNLVVPKGSMIIQAADNAGIPIPRFCYHEKLPIAANCRMCLVDVEKV 68
Query: 295 PKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMA 474
PKP+ ACA PVM+GM+V+T S+ + + VMEFLL+NHPLDCPICDQGGEC+LQD SM
Sbjct: 69 PKPLPACATPVMEGMKVRTRSEKALQYQRSVMEFLLINHPLDCPICDQGGECELQDVSMG 128
Query: 475 FGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+G SRF + KR V D+D+GPL+ T MTRCI CTRC+RF +++A
Sbjct: 129 YGRSVSRFHE----RKRVVPDEDIGPLVATEMTRCIQCTRCVRFTADIA 173
>UniRef50_Q82TU9 Cluster: NADH-quinone oxidoreductase; n=4;
Betaproteobacteria|Rep: NADH-quinone oxidoreductase -
Nitrosomonas europaea
Length = 801
Score = 221 bits (539), Expect = 1e-56
Identities = 97/163 (59%), Positives = 126/163 (77%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + ID + V V G+TV+ AA Q+G+ IP FCYH++L++A NCRMCLVEVEK+PKP+ A
Sbjct: 2 INIEIDGKQVTVAQGSTVMDAARQIGIYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLPA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA PV +GM+V T+S A++GVMEFLL+NHPLDCPICDQGGEC LQD ++ +GS S
Sbjct: 62 CATPVAEGMKVSTHSQQAVTAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYGSSGS 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
R+ + KRAV +K++GPLI T MTRCIHCTRC+RF E+A
Sbjct: 122 RYQE----PKRAVTNKNLGPLIATDMTRCIHCTRCVRFGQEIA 160
>UniRef50_A4BTQ8 Cluster: NADH-quinone oxidoreductase; n=3;
Ectothiorhodospiraceae|Rep: NADH-quinone oxidoreductase
- Nitrococcus mobilis Nb-231
Length = 798
Score = 219 bits (534), Expect = 6e-56
Identities = 96/169 (56%), Positives = 126/169 (74%)
Frame = +1
Query: 115 QAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKS 294
+++PE V + +D + G+ ++QA G++IPRFCYH +L++A NCRMCLVEVE++
Sbjct: 7 RSEPEMVTLEVDGVELQAPKGSMLIQATDPAGIDIPRFCYHRKLSIAANCRMCLVEVERA 66
Query: 295 PKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMA 474
PKP+ ACA PV +GM+V T S A+ GVMEFLL+NHPLDCPICDQGGEC+LQD SM
Sbjct: 67 PKPLPACATPVAEGMKVWTRSKGAVAAQRGVMEFLLINHPLDCPICDQGGECELQDLSMG 126
Query: 475 FGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
FG SRF++ KR V+D+D+GPL+ T MTRCIHCTRC+RF E+A
Sbjct: 127 FGRSLSRFSE----RKRVVKDEDLGPLVATEMTRCIHCTRCVRFLDEIA 171
>UniRef50_UPI0000DAE3E1 Cluster: hypothetical protein
Rgryl_01000222; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000222 - Rickettsiella
grylli
Length = 790
Score = 218 bits (533), Expect = 8e-56
Identities = 95/163 (58%), Positives = 126/163 (77%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+++ ID + + V TT+++AA + G+ IPRFCYH++L++ NCRMCLV+VEK KP+ A
Sbjct: 2 IDIEIDGRLLRVEQNTTIIEAADKAGIYIPRFCYHKKLSIVANCRMCLVDVEKFGKPLPA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA PV GM+V T SD T++A+ VMEFLL+NHPLDCPICDQGGEC+LQD S+ +GS S
Sbjct: 62 CATPVTAGMKVYTTSDKTKEAQRAVMEFLLINHPLDCPICDQGGECELQDLSLGYGSSLS 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
RFT+ GKR+V+D ++GPLI T MTRCI CTRC+RF E+A
Sbjct: 122 RFTE----GKRSVKDDNLGPLISTEMTRCIQCTRCVRFGQEIA 160
>UniRef50_Q9G8T0 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit; n=1; Rhodomonas salina|Rep: NADH-ubiquinone
oxidoreductase 75 kDa subunit - Rhodomonas salina
(Cryptomonas salina)
Length = 680
Score = 218 bits (532), Expect = 1e-55
Identities = 97/162 (59%), Positives = 125/162 (77%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
++VFI+D P V ++L++ +G EI RFC+HE+L VAGNCRMCLVE++ PK A+
Sbjct: 4 IDVFINDNPFKVSATASILESCNALGFEISRFCFHEKLFVAGNCRMCLVEIKNQPKLAAS 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA+ +GM V TNS + ++A+E V+EFLL+NHPLDCPICDQGGECDLQDQS +GSDKS
Sbjct: 64 CAVFFNQGMSVYTNSPVVKRAKENVLEFLLINHPLDCPICDQGGECDLQDQSFFYGSDKS 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
RF F KRAV +K+ GPL+KTIM RCI CTRC+RFA++V
Sbjct: 124 RF----FEYKRAVANKNCGPLVKTIMNRCIQCTRCVRFANDV 161
>UniRef50_Q6G394 Cluster: NADH-quinone oxidoreductase; n=25;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase -
Bartonella henselae (Rochalimaea henselae)
Length = 689
Score = 216 bits (528), Expect = 3e-55
Identities = 100/172 (58%), Positives = 128/172 (74%), Gaps = 9/172 (5%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-KPVA 309
+ + +D + + V T+LQAA G E+PRFC+HE L++AGNCRMCLVEV+ P KP A
Sbjct: 2 INIKVDGKEIEVPDYYTLLQAAEAAGAEVPRFCFHESLSIAGNCRMCLVEVKGGPPKPQA 61
Query: 310 ACAMPVM--------KGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQ 465
+CAM V + + TN+ + +KAREGVMEFLL+NHPLDCP+CDQGGECDLQDQ
Sbjct: 62 SCAMGVRDLRLGPNGEAPEIFTNTAMVKKAREGVMEFLLINHPLDCPVCDQGGECDLQDQ 121
Query: 466 SMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+M +G D SR+T+ KRAVEDK +GPL+KT+MTRCIHCTRC+RF +EVA
Sbjct: 122 AMLYGRDCSRYTE----NKRAVEDKYIGPLVKTVMTRCIHCTRCVRFTTEVA 169
>UniRef50_P29915 Cluster: NADH-quinone oxidoreductase chain 3; n=25;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase
chain 3 - Paracoccus denitrificans
Length = 673
Score = 216 bits (527), Expect = 4e-55
Identities = 103/172 (59%), Positives = 129/172 (75%), Gaps = 10/172 (5%)
Frame = +1
Query: 136 EVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-KPVAA 312
++ IDD + V P T++QA G+E+PRFCYHERL++AGNCRMCLVEV P KP A+
Sbjct: 6 KIKIDDTIIEVDPNMTLIQACEMAGIEVPRFCYHERLSIAGNCRMCLVEVVGGPPKPAAS 65
Query: 313 CAMPVMKGMR---------VKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQ 465
CAM V K +R ++TNS + +KAREGVMEFLL+NHPLDCPICDQGGECDLQDQ
Sbjct: 66 CAMQV-KDLRPGPEGAPSEIRTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQ 124
Query: 466 SMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+MA+G D SR+ + KRA ED ++GPL++T MTRCI CTRC+RF +EVA
Sbjct: 125 AMAYGVDFSRYRE----PKRATEDLNLGPLVETHMTRCISCTRCVRFTTEVA 172
>UniRef50_A7DLV2 Cluster: NADH-quinone oxidoreductase, chain G; n=4;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase,
chain G - Methylobacterium extorquens PA1
Length = 708
Score = 213 bits (520), Expect = 3e-54
Identities = 100/170 (58%), Positives = 125/170 (73%), Gaps = 8/170 (4%)
Frame = +1
Query: 136 EVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAAC 315
++ ID V V T+LQA G EIPRFC+HERL++AGNCRMCLVE++ +PKPVA+C
Sbjct: 23 KILIDGTEVDVPADYTLLQACEIAGAEIPRFCFHERLSIAGNCRMCLVELKGAPKPVASC 82
Query: 316 AMPVM--------KGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSM 471
A V + V T S T+KAREGVMEFLL+NHPLDCPICDQGG CDLQDQ+M
Sbjct: 83 AYAVKDCRPGPNGEPPEVLTRSGTTKKAREGVMEFLLINHPLDCPICDQGGHCDLQDQAM 142
Query: 472 AFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
A+G D +R+++ KRAVE+K +GPL++T M RCIHCTRC+RF +EVA
Sbjct: 143 AYGVDSTRYSE----NKRAVEEKYIGPLVRTAMNRCIHCTRCVRFLAEVA 188
>UniRef50_Q37373 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit; n=1; Acanthamoeba castellanii|Rep:
NADH-ubiquinone oxidoreductase 75 kDa subunit -
Acanthamoeba castellanii (Amoeba)
Length = 675
Score = 212 bits (517), Expect = 7e-54
Identities = 95/147 (64%), Positives = 117/147 (79%)
Frame = +1
Query: 181 TVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSD 360
T++QA + V+I RFC+HE+L++AGNCRMCLVE K KP+A+CA+ V M + TN+
Sbjct: 20 TLIQACLKNKVDISRFCFHEKLSIAGNCRMCLVEDLKQVKPLASCAINVSNSMNIYTNTL 79
Query: 361 LTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDK 540
+KARE V+EFLL NHPLDCPICDQGGECDLQDQS+ FGSD+ RF + KR+VEDK
Sbjct: 80 KVKKARESVLEFLLANHPLDCPICDQGGECDLQDQSVVFGSDRGRF----YEFKRSVEDK 135
Query: 541 DVGPLIKTIMTRCIHCTRCIRFASEVA 621
D GPLIKTIM RCIHCTRC+RF++EVA
Sbjct: 136 DCGPLIKTIMNRCIHCTRCVRFSNEVA 162
>UniRef50_Q9G8R8 Cluster: NADH dehydrogenase subunit 11; n=1;
Naegleria gruberi|Rep: NADH dehydrogenase subunit 11 -
Naegleria gruberi
Length = 695
Score = 210 bits (512), Expect = 3e-53
Identities = 90/146 (61%), Positives = 116/146 (79%)
Frame = +1
Query: 181 TVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSD 360
T++Q + V IPRFCYHE+L++AGNCRMCLVE+ KPV ACA + + + +S
Sbjct: 20 TIIQFCDLINVVIPRFCYHEKLSIAGNCRMCLVEMNNGIKPVIACATNISANIEIALDSL 79
Query: 361 LTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDK 540
L +KARE V+EFLL+NHPLDCPICDQGGECDLQDQ++ +GSD+ RF ++ KR+VEDK
Sbjct: 80 LVKKARENVLEFLLINHPLDCPICDQGGECDLQDQTIVYGSDRGRFKEM----KRSVEDK 135
Query: 541 DVGPLIKTIMTRCIHCTRCIRFASEV 618
++GP++KTIMTRCIHCTRCIRF+ EV
Sbjct: 136 ELGPVVKTIMTRCIHCTRCIRFSDEV 161
>UniRef50_Q8XXQ7 Cluster: NADH-quinone oxidoreductase; n=63;
Proteobacteria|Rep: NADH-quinone oxidoreductase -
Ralstonia solanacearum (Pseudomonas solanacearum)
Length = 783
Score = 208 bits (509), Expect = 6e-53
Identities = 97/164 (59%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
VE+ ID + V V G+ V++AA Q G IP FCYH +L++A NCRMCLVEVEK+PK + A
Sbjct: 2 VEIEIDGKKVEVAEGSLVMEAARQAGTYIPHFCYHRKLSIAANCRMCLVEVEKAPKALPA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA PV GM+V TNS+ KA++ VMEFLL+NHPLDCPICDQGGEC LQD ++ +G +S
Sbjct: 62 CATPVTAGMKVFTNSEKAVKAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGKSES 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIK-TIMTRCIHCTRCIRFASEVA 621
R+ + KR V K+VGPLI MTRCIHCTRC+RF EVA
Sbjct: 122 RYKE----EKRVVFHKNVGPLISMEEMTRCIHCTRCVRFGQEVA 161
>UniRef50_Q83BR1 Cluster: NADH-quinone oxidoreductase; n=3; Coxiella
burnetii|Rep: NADH-quinone oxidoreductase - Coxiella
burnetii
Length = 787
Score = 208 bits (507), Expect = 1e-52
Identities = 96/163 (58%), Positives = 119/163 (73%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
VE+ ID + G ++++AA ++GV IPRFCYH++L+VA NCRMCLVEVEKS KP+ A
Sbjct: 2 VELEIDGKKTTAEEGASIIEAADEMGVYIPRFCYHKKLSVAANCRMCLVEVEKSGKPLPA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA PV GM+V T S +A+ VMEFLL+NHPLDCPICDQGGEC+LQD +M FG S
Sbjct: 62 CATPVTAGMKVFTQSKKALEAQRAVMEFLLINHPLDCPICDQGGECELQDLAMGFGRAHS 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+ D KRAV D+GPLI+T MTRCI CTRC+RF E+A
Sbjct: 122 NYED----PKRAVFSDDIGPLIETEMTRCIQCTRCVRFGEEIA 160
>UniRef50_Q5WT26 Cluster: NADH-quinone oxidoreductase; n=4;
Legionella pneumophila|Rep: NADH-quinone oxidoreductase
- Legionella pneumophila (strain Lens)
Length = 783
Score = 208 bits (507), Expect = 1e-52
Identities = 92/159 (57%), Positives = 118/159 (74%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
ID + G +++ A + G+ IPRFCYH++L+VA NCRMCLVEVE KPV ACA P
Sbjct: 6 IDGKTFEAENGKMIIEVADEAGIYIPRFCYHKKLSVAANCRMCLVEVENGRKPVPACATP 65
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTD 504
+ GM+V T S+ +++ VMEFLL+NHPLDCPICDQGGEC+LQD SM FG+DKS +T+
Sbjct: 66 ITNGMKVFTKSEQAIHSQKVVMEFLLINHPLDCPICDQGGECELQDISMGFGADKSEYTE 125
Query: 505 IHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
KRAV+D+++G LI T MTRCIHCTRC+RF E+A
Sbjct: 126 ----SKRAVDDENLGTLISTEMTRCIHCTRCVRFGEEIA 160
>UniRef50_A1KRS9 Cluster: NADH-quinone oxidoreductase; n=4;
Neisseria|Rep: NADH-quinone oxidoreductase - Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 /FAM18)
Length = 753
Score = 208 bits (507), Expect = 1e-52
Identities = 93/164 (56%), Positives = 123/164 (75%), Gaps = 1/164 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+++ ID + V V G TV++AA ++G IP FCYH++L++A NCRMCLV VEK+PKP+ A
Sbjct: 2 LQIEIDGKQVSVEQGATVIEAAHKLGTYIPHFCYHKKLSIAANCRMCLVNVEKAPKPLPA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA PV GM V+T+S R+A+EGVMEFLL+NHPLDCP CDQGGEC LQD ++ +G S
Sbjct: 62 CATPVTDGMIVRTHSAKAREAQEGVMEFLLINHPLDCPTCDQGGECQLQDLAVGYGKTTS 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKT-IMTRCIHCTRCIRFASEVA 621
R+T+ KR+V KD+GPL+ M+RCIHCTRC+RF E+A
Sbjct: 122 RYTE----EKRSVVGKDMGPLVSAEEMSRCIHCTRCVRFTEEIA 161
>UniRef50_Q0EZQ3 Cluster: NADH-quinone oxidoreductase; n=1;
Mariprofundus ferrooxydans PV-1|Rep: NADH-quinone
oxidoreductase - Mariprofundus ferrooxydans PV-1
Length = 785
Score = 207 bits (506), Expect = 1e-52
Identities = 90/161 (55%), Positives = 119/161 (73%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACA 318
+FI+DQ V V PGT++L+A Q ++P FCYH L+VA NCRMCLVEVE PKP A+C
Sbjct: 4 LFINDQEVEVTPGTSILEACRQNDFDVPYFCYHPELSVAANCRMCLVEVEGWPKPAASCC 63
Query: 319 MPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRF 498
PV +GM+VKT ++ +K R+ VME+LL++HPLDCP+CDQGG C LQD ++ G+ K R+
Sbjct: 64 TPVSEGMKVKTQTESLKKDRQMVMEYLLIHHPLDCPVCDQGGSCKLQDYALDHGASKGRY 123
Query: 499 TDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+ KRAV + ++GP + T MTRCIHCTRC+RFA EVA
Sbjct: 124 AE----PKRAVVNYELGPFVNTCMTRCIHCTRCVRFADEVA 160
>UniRef50_Q3S282 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit; n=1; Thalassiosira pseudonana|Rep:
NADH-ubiquinone oxidoreductase 75 kDa subunit -
Thalassiosira pseudonana (Marine diatom)
Length = 749
Score = 205 bits (501), Expect = 6e-52
Identities = 89/151 (58%), Positives = 117/151 (77%), Gaps = 3/151 (1%)
Frame = +1
Query: 178 TTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMR---VK 348
T +++ +G+ IP +CYH+ L+++GNCRMCLVE++ SPKPV +CAM + +
Sbjct: 22 TPLIEYCETLGINIPHYCYHKGLSISGNCRMCLVELKNSPKPVVSCAMNAKSCLANGDIY 81
Query: 349 TNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRA 528
TNS L +KARE V+EFLL+NHPLDCPICDQGGECDLQDQS+ FG K RF +S KR
Sbjct: 82 TNSSLVKKARENVLEFLLLNHPLDCPICDQGGECDLQDQSLFFGLTKKRF----YSFKRV 137
Query: 529 VEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
V DK++GP++KT+MTRCIHCTRC+RFA+E+A
Sbjct: 138 VMDKNIGPIVKTVMTRCIHCTRCVRFAAEIA 168
>UniRef50_A1AVR8 Cluster: NADH-quinone oxidoreductase; n=2;
sulfur-oxidizing symbionts|Rep: NADH-quinone
oxidoreductase - Ruthia magnifica subsp. Calyptogena
magnifica
Length = 753
Score = 202 bits (493), Expect = 5e-51
Identities = 86/163 (52%), Positives = 121/163 (74%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+E+ ID + + G +++ + GV +PRFCYH++L+V +CRMCL++VE +PKP A
Sbjct: 4 IEIEIDGKIISAKAGEMLIKVTDREGVSVPRFCYHKKLSVVASCRMCLIDVEGAPKPQPA 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C+ PV +GM+V T +D + +++ VMEFLL+NHPLDCPICDQGGEC+LQD ++ +GSD S
Sbjct: 64 CSTPVNEGMKVHTQNDKAKVSQKAVMEFLLINHPLDCPICDQGGECELQDVAVEYGSDVS 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
RF++ KR V D D+G LI+T MTRCIHCTRC+RF E+A
Sbjct: 124 RFSE----DKRIVSDSDIGALIQTDMTRCIHCTRCVRFGLEIA 162
>UniRef50_Q9G927 Cluster: NADH dehydrogenase subunit 11; n=1;
Ochromonas danica|Rep: NADH dehydrogenase subunit 11 -
Ochromonas danica
Length = 670
Score = 198 bits (484), Expect = 7e-50
Identities = 87/147 (59%), Positives = 109/147 (74%)
Frame = +1
Query: 181 TVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSD 360
++L+A VG+ +PRFCYHE L+++GNCRMCLVE+E KPVA+C + M + +S
Sbjct: 18 SILEACKNVGITLPRFCYHELLSISGNCRMCLVEIENQEKPVASCVTEIDSNMCIGVDSP 77
Query: 361 LTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDK 540
+KAR+ V+E LL+NHPLDCPICDQ GECDLQDQ+ FG+ SRF F K+ VEDK
Sbjct: 78 FVKKARQNVLESLLLNHPLDCPICDQAGECDLQDQAKEFGNSHSRF----FYSKQTVEDK 133
Query: 541 DVGPLIKTIMTRCIHCTRCIRFASEVA 621
GPLIKTIMTRCI CTRC+RFA E+A
Sbjct: 134 YCGPLIKTIMTRCISCTRCVRFADEIA 160
>UniRef50_Q0BK57 Cluster: NADH-quinone oxidoreductase; n=11;
Francisella tularensis|Rep: NADH-quinone oxidoreductase
- Francisella tularensis subsp. holarctica (strain
OSU18)
Length = 788
Score = 198 bits (483), Expect = 9e-50
Identities = 86/167 (51%), Positives = 120/167 (71%)
Frame = +1
Query: 121 QPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPK 300
+ +K+ + ID + +P ++++ A G+ IPRFCYH++L+VA NCRMCLV+VE + +
Sbjct: 6 ESKKISIEIDGKDYQALPNQSIIEVADANGIYIPRFCYHKKLSVAANCRMCLVDVEGARR 65
Query: 301 PVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 480
ACA PVM GM+VKT S+ + ++ VMEFLL+NHPLDCPICDQGGEC+LQD +M +G
Sbjct: 66 ASPACATPVMDGMKVKTRSEKALQMQKDVMEFLLINHPLDCPICDQGGECELQDIAMGYG 125
Query: 481 SDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+ S + + KR VED ++GPL+ T MTRCI CTRC+RF E+A
Sbjct: 126 NTTSEYLE----SKRTVEDPELGPLVATDMTRCILCTRCVRFGEEIA 168
>UniRef50_A6GS81 Cluster: NADH-quinone oxidoreductase; n=1;
Limnobacter sp. MED105|Rep: NADH-quinone oxidoreductase
- Limnobacter sp. MED105
Length = 758
Score = 197 bits (480), Expect = 2e-49
Identities = 90/164 (54%), Positives = 117/164 (71%), Gaps = 1/164 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
VE+ ID V V G+ ++ AA + G +P FCYH++L++A NCRMCLV+VEK+PKP+ A
Sbjct: 2 VELEIDGVKVEVAEGSMLMDAAEKAGSYVPHFCYHKKLSIAANCRMCLVDVEKAPKPLPA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA PV GM V+T S+ A++ VMEFLL+NHPLDCPICDQGGEC LQD ++ +G S
Sbjct: 62 CATPVSPGMIVRTKSEKAVNAQKSVMEFLLINHPLDCPICDQGGECQLQDIAVGYGGVSS 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKT-IMTRCIHCTRCIRFASEVA 621
R+ + KR V KD+GPL+ M+RCIHCTRC+RF EVA
Sbjct: 122 RYQE----EKRVVFYKDIGPLVSAQEMSRCIHCTRCVRFGQEVA 161
>UniRef50_Q34312 Cluster: NADH-ubiquinone oxidoreductase 75 kDa
subunit; n=3; Dictyosteliida|Rep: NADH-ubiquinone
oxidoreductase 75 kDa subunit - Dictyostelium discoideum
(Slime mold)
Length = 688
Score = 197 bits (480), Expect = 2e-49
Identities = 92/150 (61%), Positives = 111/150 (74%), Gaps = 3/150 (2%)
Frame = +1
Query: 181 TVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGM---RVKT 351
T+LQA G+EIPRFCYHE+L +AGNCRMCLV V K +AAC +P+ + ++T
Sbjct: 22 TILQACTANGIEIPRFCYHEKLTIAGNCRMCLVYVTNEEKLLAACGIPLDENFDDESIET 81
Query: 352 NSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAV 531
D KAREGVMEFLL+NHPLDCPICDQGGECDLQ+Q++A+G D RF + KRAV
Sbjct: 82 EIDEILKAREGVMEFLLINHPLDCPICDQGGECDLQEQTLAYGLDTGRF----YIKKRAV 137
Query: 532 EDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
E K G LIK IMTRCIHCTRC+RF +E+A
Sbjct: 138 EIKTFGRLIKGIMTRCIHCTRCVRFLTEIA 167
>UniRef50_Q67P16 Cluster: NADH-quinone oxidoreductase; n=1;
Symbiobacterium thermophilum|Rep: NADH-quinone
oxidoreductase - Symbiobacterium thermophilum
Length = 817
Score = 174 bits (423), Expect = 2e-42
Identities = 85/168 (50%), Positives = 105/168 (62%)
Frame = +1
Query: 118 AQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP 297
++ E V V ID + V GT V++AA QVG++IP FCYH +L G CRMCLVE+EK P
Sbjct: 2 SEQELVTVTIDGRTARVPKGTLVVEAAKQVGIDIPVFCYHPKLDPVGVCRMCLVEIEKIP 61
Query: 298 KPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF 477
KP AC V GM V T + R GV+EFLL+NHPLDCP+CD+GGECDLQD + A+
Sbjct: 62 KPQPACTTRVSDGMVVHTQTQRVSDLRRGVLEFLLLNHPLDCPVCDKGGECDLQDLTFAY 121
Query: 478 GSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
G SR D +AVE +G I RCI C RC+RF E+A
Sbjct: 122 GQTTSRLLDPKVRKDKAVE---LGNFIILDNERCILCRRCVRFDDEIA 166
>UniRef50_Q02CT7 Cluster: NADH-quinone oxidoreductase; n=1;
Solibacter usitatus Ellin6076|Rep: NADH-quinone
oxidoreductase - Solibacter usitatus (strain Ellin6076)
Length = 761
Score = 169 bits (410), Expect = 6e-41
Identities = 77/161 (47%), Positives = 106/161 (65%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + ID + V V P T V+ AA VG+EIP FCY+E L + CRMCLVEVEK PK + A
Sbjct: 5 VNLTIDGRAVQVPPQTLVIDAAKTVGIEIPAFCYYEGLTLQAACRMCLVEVEKMPKMMTA 64
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C +PV +GM V+T ++ ++AR+ +EFLL NHPLDCP+CD+GGEC+LQD +G+ +S
Sbjct: 65 CTLPVAEGMIVRTETEQVKQARKYTLEFLLTNHPLDCPVCDKGGECELQDMVFRYGAGES 124
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASE 615
R+T+ K +K P++ RCI C RC+R +E
Sbjct: 125 RYTE----EKVHTPEKQFSPVVFFDAPRCILCFRCVRICNE 161
>UniRef50_Q6MDR0 Cluster: NADH-quinone oxidoreductase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
NADH-quinone oxidoreductase - Protochlamydia amoebophila
(strain UWE25)
Length = 773
Score = 168 bits (409), Expect = 8e-41
Identities = 79/163 (48%), Positives = 106/163 (65%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + ID + + V GTTV AA Q+G++IP FCY +R+ G CRMCLVEVEK K A+
Sbjct: 7 INLIIDGKELSVPKGTTVYHAAKQLGIDIPIFCYQDRMPPFGACRMCLVEVEKMNKLQAS 66
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA+ V +GM VKT S + ++ REG++E LL+NHPLDCPICD+GGEC LQDQ++ G +S
Sbjct: 67 CALEVAEGMVVKTQSTVAKEGREGILELLLINHPLDCPICDKGGECPLQDQTLKHGPGES 126
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
RF + + + +GP + RCI C RC RF VA
Sbjct: 127 RFYE---EKRHFTKALPLGPTLMLDRERCIVCARCTRFGDIVA 166
>UniRef50_Q4QDP1 Cluster: NADH:ubiquinone oxidoreductase 78 Kd
subunit-like protein; n=6; Trypanosomatidae|Rep:
NADH:ubiquinone oxidoreductase 78 Kd subunit-like
protein - Leishmania major
Length = 258
Score = 167 bits (407), Expect = 1e-40
Identities = 77/174 (44%), Positives = 112/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 103 ADQVQAQPEKVEVFIDDQPVHVVPGT-TVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLV 279
A Q + +F++ +PV ++P VL+ + G+ +P+FCYH L+VAGNCRMC+V
Sbjct: 25 AGQYAENKPRAIMFVNKRPVEIIPQEENVLEVLEREGITVPKFCYHPILSVAGNCRMCMV 84
Query: 280 EVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQ 459
+V+ + V AC+ + GM + T+S L R AREG +E +L+NHP DCPIC+Q CDLQ
Sbjct: 85 QVDGTQNIVVACSTVALPGMSIITDSRLVRDAREGNVELILINHPNDCPICEQATNCDLQ 144
Query: 460 DQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+ SM +G+D R+ + K+AVED P + ++ RCIHCTRCIRF +E A
Sbjct: 145 NVSMNYGTDIPRYRE----DKKAVEDFYFDPQTRVVLNRCIHCTRCIRFLNEHA 194
>UniRef50_P56914 Cluster: NADH-quinone oxidoreductase subunit G 2;
n=3; Rhizobiaceae|Rep: NADH-quinone oxidoreductase
subunit G 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 853
Score = 165 bits (400), Expect = 1e-39
Identities = 79/164 (48%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
++V ID+Q + V G+TVL AA ++G+EIP FCY +RL +CRMCLVE+E + A
Sbjct: 2 IKVTIDEQSLEVEAGSTVLAAAERLGIEIPTFCYWKRLPPLASCRMCLVEIEGLRRLQPA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
CA GM V+TN+ L + R +++ LL NHPLDCPICD+GGEC+LQD MA+G +S
Sbjct: 62 CATVAADGMVVRTNTPLIEETRSSMLDMLLANHPLDCPICDKGGECELQDMVMAYGPGES 121
Query: 493 RFTDIHFSGKRAVEDKDV--GPLIKTIMTRCIHCTRCIRFASEV 618
RF D KR KD+ P+I + RCI C RC+R EV
Sbjct: 122 RFRD----PKRVFHSKDIRLSPVIIMNVNRCIQCQRCVRMCEEV 161
>UniRef50_A7H9V6 Cluster: Ferredoxin; n=4; Cystobacterineae|Rep:
Ferredoxin - Anaeromyxobacter sp. Fw109-5
Length = 603
Score = 164 bits (399), Expect = 1e-39
Identities = 82/170 (48%), Positives = 107/170 (62%), Gaps = 4/170 (2%)
Frame = +1
Query: 124 PEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-- 297
P V ID + V PGTTV++AA +G+EIP +CYH+RL++A NCRMCLVE+ +P
Sbjct: 45 PGMVTATIDGREVVAKPGTTVIEAAKALGIEIPYYCYHKRLSIAANCRMCLVEMSNAPGG 104
Query: 298 KPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF 477
K V AC MP+ +G+ VKT++ + +EFLL+NHP+DC ICDQ GEC LQD M +
Sbjct: 105 KLVPACQMPIAEGVTVKTDTPRVKDQTRATLEFLLLNHPVDCAICDQAGECKLQDYYMKY 164
Query: 478 GSDKSRFTDIH--FSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
SR D+ GKR V +GP + RCI CTRC+RF EVA
Sbjct: 165 DRQPSRL-DVPKVTKGKRVV----LGPTVVLDQERCILCTRCVRFMREVA 209
>UniRef50_Q9XAR0 Cluster: NADH-quinone oxidoreductase subunit G;
n=32; Actinomycetales|Rep: NADH-quinone oxidoreductase
subunit G - Streptomyces coelicolor
Length = 843
Score = 160 bits (389), Expect = 2e-38
Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 5/168 (2%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + ID + V GT V++AA Q+G+EIPRFC H L AG CR C+VEVE KP+A+
Sbjct: 22 VTLTIDGAEISVPKGTLVIRAAEQLGIEIPRFCDHPLLDPAGACRQCIVEVEGQRKPMAS 81
Query: 313 CAMPVMKGMRVKT--NSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
C + GM VKT S + KA+ GVME LL+NHPLDCP+CD+GGEC LQ+Q+M+ G
Sbjct: 82 CTITCTDGMVVKTQLTSPVAEKAQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSHGQS 141
Query: 487 KSRFTDIHFSGKRAVEDKDVGPLIKTIM---TRCIHCTRCIRFASEVA 621
SR F GK+ +K V P+ ++ RC+ C RC RF+++VA
Sbjct: 142 DSR-----FEGKKRTYEKPV-PISTQVLLDRERCVLCARCTRFSNQVA 183
>UniRef50_Q8F9N1 Cluster: NADH-quinone oxidoreductase; n=4;
Leptospira|Rep: NADH-quinone oxidoreductase - Leptospira
interrogans
Length = 482
Score = 158 bits (383), Expect = 1e-37
Identities = 75/162 (46%), Positives = 100/162 (61%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V++ ID V ++ AA VGV+IP FCYH +L++ G CRMCL+E+E P+ AA
Sbjct: 2 VKIKIDGIEYEVDEKKNLISAAKDVGVDIPFFCYHPKLSIVGMCRMCLIEIEGVPRLQAA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C V +G+ + T +D ++AREG MEFLL NHPLDCP+CD+ GEC LQD + G S
Sbjct: 62 CNTKVTEGLSIFTKNDRIKEAREGTMEFLLANHPLDCPVCDKAGECQLQDNAFKEGKGNS 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
RFT KR V ++VG + RCI C RC+RF E+
Sbjct: 122 RFT----LEKRNVPQEEVGSNLIINHNRCIVCYRCVRFEEEI 159
>UniRef50_Q5YWD3 Cluster: NADH-quinone oxidoreductase; n=1; Nocardia
farcinica|Rep: NADH-quinone oxidoreductase - Nocardia
farcinica
Length = 875
Score = 156 bits (378), Expect = 5e-37
Identities = 81/168 (48%), Positives = 105/168 (62%), Gaps = 5/168 (2%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V V ID V V GT V++AA +G++IPRFC H L G CR CLVEVE KPVA+
Sbjct: 18 VTVVIDGVQVSVPAGTLVIRAAELIGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPVAS 77
Query: 313 CAMPVMKGMRVKTN--SDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
C V GM V+T S + +A+EGVME LL+NHPLDCP+CD+GGEC LQ+Q+M+ G
Sbjct: 78 CTQTVADGMVVRTQLTSPVAGRAQEGVMELLLINHPLDCPVCDKGGECPLQNQAMSSGRP 137
Query: 487 KSRFTDIHFSGKRAVEDKDVGPLIKTIM---TRCIHCTRCIRFASEVA 621
+SR F G + K + PL ++ RC+ C RC RF+ +VA
Sbjct: 138 ESR-----FDGVKRTYPKPI-PLSSAVLLDRERCVLCARCTRFSQQVA 179
>UniRef50_A7BBX3 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 853
Score = 156 bits (378), Expect = 5e-37
Identities = 83/178 (46%), Positives = 106/178 (59%), Gaps = 12/178 (6%)
Frame = +1
Query: 124 PEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKS--- 294
P ++V IDD V V GT V++AA Q G+ IPRFC H LA CR CLVEV
Sbjct: 5 PNMIDVTIDDVQVSVPQGTLVIRAAEQAGIRIPRFCDHPLLAPVAACRQCLVEVGMPDRN 64
Query: 295 -------PKPVAACAMPVMKGMRVKTN--SDLTRKAREGVMEFLLVNHPLDCPICDQGGE 447
PKP +CA V GM VKT S++ +A+ GVMEFLL+NHPLDCP+CD+GGE
Sbjct: 65 TGELRFMPKPQPSCAQTVTPGMVVKTQHTSEVIDRAQRGVMEFLLINHPLDCPVCDKGGE 124
Query: 448 CDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
C LQ+Q++ G KSRFTD + K+ + + I RCI C RC+RF E++
Sbjct: 125 CPLQNQALTEGRGKSRFTDAKRTFKKPLR---LTSQILLDRERCILCQRCVRFGKEIS 179
>UniRef50_A7CUF9 Cluster: Ferredoxin; n=1; Opitutaceae bacterium
TAV2|Rep: Ferredoxin - Opitutaceae bacterium TAV2
Length = 608
Score = 153 bits (372), Expect = 2e-36
Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 25/191 (13%)
Frame = +1
Query: 124 PEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVE------- 282
P+ + V ID + V V GT +++AA VGV++P +CYH +L + GNCRMCL+E
Sbjct: 20 PDLITVNIDGREVSVPRGTNIIEAARLVGVDVPHYCYHPKLTIVGNCRMCLIEMGLPAVD 79
Query: 283 ----------------VEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHP 414
+ P+P C G+ ++T + + R AREGVMEFLL+NHP
Sbjct: 80 PATKTPIIDPATGKQKINWMPRPQIGCGTNATPGLHIRTTTQMVRDAREGVMEFLLINHP 139
Query: 415 LDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDK--DVGPLIKTIMTRCIHC 588
LDCPICDQ GEC LQ+Q+ +G SRF + ++ V+ K +GP + RCI C
Sbjct: 140 LDCPICDQAGECKLQEQATGYGRGYSRFIE-----EKNVKPKRTQLGPRVTLDDERCILC 194
Query: 589 TRCIRFASEVA 621
+RC+RF+ E+A
Sbjct: 195 SRCVRFSKEIA 205
>UniRef50_Q1IS39 Cluster: NADH-quinone oxidoreductase; n=1;
Acidobacteria bacterium Ellin345|Rep: NADH-quinone
oxidoreductase - Acidobacteria bacterium (strain
Ellin345)
Length = 788
Score = 153 bits (370), Expect = 4e-36
Identities = 67/161 (41%), Positives = 102/161 (63%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + +D + + GT +++A VG+E+P FCY+ L++ G CRMCLVEVEK PK A
Sbjct: 4 VNLTVDGKKLTAPAGTLLIEACKSVGIEVPSFCYYPGLSLQGACRMCLVEVEKMPKLQTA 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV +GM V T ++ ++AR+ ++E LL NHPLDCP+CD GGEC+LQD + +G+ +S
Sbjct: 64 CTTPVSEGMVVSTETEKIKQARKSMLELLLGNHPLDCPVCDAGGECELQDMTFKYGAAES 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASE 615
++ + K +++ P++ RCI C RC+R E
Sbjct: 124 KYME----AKNHKDEQQWSPVVFFDRPRCILCYRCVRVCGE 160
>UniRef50_A1ALP5 Cluster: Ferredoxin; n=1; Pelobacter propionicus
DSM 2379|Rep: Ferredoxin - Pelobacter propionicus
(strain DSM 2379)
Length = 468
Score = 152 bits (368), Expect = 7e-36
Identities = 69/163 (42%), Positives = 102/163 (62%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+E+ ID+Q + G TV++AA + G+ IP CYH L++AGNCR+CLV+V PK + A
Sbjct: 2 IELKIDNQVIETQEGETVMEAALRHGIHIPHLCYHPCLSIAGNCRICLVQVNGRPKLMPA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C +P+ GM ++T+S+ R AR VM+F+ +NHP+DC ICD+ GEC LQ+ M +G+D+
Sbjct: 62 CNLPITPGMEIETDSEPVRAARRAVMQFITLNHPVDCGICDKAGECRLQEYQMKYGADEP 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
D + D+ I RCI C+RC+RF EV+
Sbjct: 122 FNIDAKHHKPKFY---DLSDRIVYDAERCILCSRCVRFTREVS 161
>UniRef50_Q74GA2 Cluster: NADH dehydrogenase I, G subunit, putative;
n=6; Geobacter|Rep: NADH dehydrogenase I, G subunit,
putative - Geobacter sulfurreducens
Length = 826
Score = 151 bits (367), Expect = 1e-35
Identities = 73/163 (44%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-KPVA 309
V + IDD+ V V T+ AA Q G+ IP C+ ++L G CRMCLVEVE+ + +
Sbjct: 2 VTLTIDDKQVTVPKDATIFDAAKQAGIRIPILCHDKKLHPFGGCRMCLVEVEQMKGRQIP 61
Query: 310 ACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDK 489
AC PV +GM V+T +D KAR+ V+E LL+ HP+DCP+CD G+CDLQ+ + +G D
Sbjct: 62 ACTTPVTEGMIVRTMTDEIVKARKMVLELLLLKHPIDCPVCDAAGDCDLQNLTYEYGVDT 121
Query: 490 SRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+RFTD F+ K V PLI+ M RC+HC +C R E+
Sbjct: 122 NRFTDEKFNWKIDY----VNPLIERDMNRCVHCGKCARICDEI 160
>UniRef50_A5FKK1 Cluster: Ferredoxin; n=3; Bacteroidetes|Rep:
Ferredoxin - Flavobacterium johnsoniae UW101
Length = 342
Score = 151 bits (367), Expect = 1e-35
Identities = 80/174 (45%), Positives = 106/174 (60%), Gaps = 12/174 (6%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEI--PRFCYHERL-AVAGNCRMCLVEVEKS--- 294
++V ID Q + V PGTT+LQAA +G ++ P CY+ +L G CR CLVEV K
Sbjct: 1 MKVTIDGQSIDVEPGTTILQAARMIGGDLVPPAMCYYSKLKGSGGKCRCCLVEVSKGSEA 60
Query: 295 -----PKPVAACAMPVMKGMRVKTNSDL-TRKAREGVMEFLLVNHPLDCPICDQGGECDL 456
PK +A+C M GM V + S +AR+ V EFLL+NHPLDCPICDQ GECDL
Sbjct: 61 DPRPMPKLMASCVTGCMDGMEVNSKSSARVMEARKSVTEFLLINHPLDCPICDQAGECDL 120
Query: 457 QDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
Q+ S G+ KSR+ + KR E +D+GP I+ M RCI C RC++ A ++
Sbjct: 121 QNLSFEHGNPKSRYIE----EKRTFEPEDIGPNIQLHMNRCILCQRCVQVADQL 170
>UniRef50_A6FCN0 Cluster: NADH-quinone oxidoreductase; n=1;
Moritella sp. PE36|Rep: NADH-quinone oxidoreductase -
Moritella sp. PE36
Length = 823
Score = 149 bits (362), Expect = 4e-35
Identities = 72/160 (45%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
I+ Q + V GTT+L AA +EIP FCY +RL++ +CRMCL+E+E PK ACA
Sbjct: 6 INGQEMEVEEGTTILNAARASTIEIPTFCYQDRLSILASCRMCLIEIEGRPKLEPACATV 65
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTD 504
V +GM V T+S+ +RE ++E LL NHPLDCP+CD+ GEC+LQD +G SR D
Sbjct: 66 VSEGMAVLTHSEKVVASREDMLEILLANHPLDCPVCDKSGECELQDTVFEYGKGDSRLAD 125
Query: 505 IHFSGKR--AVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
KR ++D + +I RCI C RC+R EV
Sbjct: 126 ----PKRIFRIDDIQLNNVITFNANRCIQCQRCVRVCEEV 161
>UniRef50_A6H1Q7 Cluster: NADH dehydrogenase I, G subunit,
N-terminal region; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: NADH dehydrogenase I, G subunit,
N-terminal region - Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511)
Length = 351
Score = 148 bits (358), Expect = 1e-34
Identities = 77/174 (44%), Positives = 105/174 (60%), Gaps = 12/174 (6%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEI--PRFCYHERL-AVAGNCRMCLVEVEKS--- 294
++V ID + V PGTT+LQAA +G E+ P CY+ +L G CR CLV+V K
Sbjct: 1 MKVTIDGHSIEVEPGTTILQAARMIGGEVVPPAMCYYSKLKGSGGKCRCCLVDVTKGSEA 60
Query: 295 -----PKPVAACAMPVMKGMRVKTN-SDLTRKAREGVMEFLLVNHPLDCPICDQGGECDL 456
PK +A+C GM + + S ++AR+ V EFLL+NHPLDCP+CDQ GECDL
Sbjct: 61 DPRAMPKLMASCVTGCQDGMEIASKASPRVQEARKSVTEFLLINHPLDCPVCDQAGECDL 120
Query: 457 QDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
Q+ S G+ KSRF + KR E +D+GP I+ M RCI C RC++ A ++
Sbjct: 121 QNLSFEHGNPKSRFIE----EKRTFEPEDIGPNIQLHMNRCILCQRCVQVADQL 170
>UniRef50_A0RMD4 Cluster: NADH-quinone oxidoreductase, g subunit;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
NADH-quinone oxidoreductase, g subunit - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 464
Score = 147 bits (357), Expect = 2e-34
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + +D + V ++ + +EIP FCYHE L V+GNCRMCL+EV +P A
Sbjct: 2 VNIVVDGETFSVDKNGNLITELKKHNIEIPHFCYHEALGVSGNCRMCLIEVVGQKRPQIA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C P+ +GM +K NS+LTRK ++G++E +NHP+DCP+CDQ GEC LQ+ M + S
Sbjct: 62 CNTPISEGMEIKINSELTRKVQKGILELEFINHPIDCPVCDQAGECSLQEYYMCYDKGDS 121
Query: 493 RFTDIHFSGK-RAVEDKDVGPLIKTIMTRCIHCTRCIRF 606
R + + K R + +D G + RC+ C RC+RF
Sbjct: 122 R---VSLAQKVRKPKKEDFGSNVIHDAERCVLCRRCVRF 157
>UniRef50_O66748 Cluster: NADH dehydrogenase I chain G; n=1; Aquifex
aeolicus|Rep: NADH dehydrogenase I chain G - Aquifex
aeolicus
Length = 632
Score = 145 bits (352), Expect = 7e-34
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
EKV+++IDD + G TVLQ A + G++IP FCYH RL++AG CRMC+V E + V
Sbjct: 3 EKVKIYIDDVEIEAEKGKTVLQVALENGIDIPYFCYHPRLSIAGACRMCVVYWEDINRLV 62
Query: 307 AACAMPVMKGMRVKTN--SDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 480
+C +PV +GMRV+T+ S++ R+ ++ +++ L+ HPLDCPICD+ GECDLQ+ +G
Sbjct: 63 ISCNLPVQEGMRVRTHRTSEMVREQQKYLLQALMTRHPLDCPICDKAGECDLQNLGAIYG 122
Query: 481 SDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
K + I K E ++ RC+ C RC R EV
Sbjct: 123 PQK-QIVPISALEKEREEHDWESDFLEYYSNRCVVCYRCTRACDEV 167
>UniRef50_Q4T4V2 Cluster: Chromosome 3 SCAF9531, whole genome
shotgun sequence; n=2; Tetraodon nigroviridis|Rep:
Chromosome 3 SCAF9531, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 457
Score = 144 bits (350), Expect = 1e-33
Identities = 64/90 (71%), Positives = 76/90 (84%)
Frame = +1
Query: 112 VQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEK 291
V+A VEVF+D +PV V PGTTVLQA + G++IPRFCYHERL+VAGNCRMCLVE+EK
Sbjct: 3 VRAASNMVEVFVDGKPVEVEPGTTVLQACEKAGIQIPRFCYHERLSVAGNCRMCLVEIEK 62
Query: 292 SPKPVAACAMPVMKGMRVKTNSDLTRKARE 381
+PKPVAACAMPVMKG + TNS+ TRKAR+
Sbjct: 63 APKPVAACAMPVMKGWNILTNSEKTRKARK 92
>UniRef50_A4LXN6 Cluster: NADH-quinone oxidoreductase; n=1;
Geobacter bemidjiensis Bem|Rep: NADH-quinone
oxidoreductase - Geobacter bemidjiensis Bem
Length = 822
Score = 144 bits (350), Expect = 1e-33
Identities = 67/162 (41%), Positives = 105/162 (64%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + ID + V V GTT+L+AAA VG++IP C+ ++++ G CR+C VEV + + A
Sbjct: 2 VSLTIDGKSVQVEKGTTILEAAATVGIKIPTLCWLQKVSPTGACRVCAVEVAGVERTMTA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV +G++V T++ R+AR+ +ME +LVNHPLDCP+CD GGECDLQD A ++K
Sbjct: 62 CNTPVKEGIQVTTDTPALREARKKIMELMLVNHPLDCPVCDAGGECDLQDSCYALDANKQ 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
++ + +R + + PLI++ RCI C +C++ E+
Sbjct: 122 EYSAV--LERRPI--RYDWPLIESDPNRCILCEKCVKVDHEI 159
>UniRef50_Q1ZRW9 Cluster: NADH-quinone oxidoreductase; n=2;
Vibrionaceae|Rep: NADH-quinone oxidoreductase - Vibrio
angustum S14
Length = 788
Score = 144 bits (349), Expect = 2e-33
Identities = 63/166 (37%), Positives = 98/166 (59%), Gaps = 5/166 (3%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVE-----KSPKP 303
++IDD+ V PG VL AA + G++ P FCYH L AG+CR+C +E + P+
Sbjct: 4 IYIDDKAVEFEPGQNVLDAARKAGIDTPYFCYHPALGAAGSCRICAMETVPQKEGEKPRT 63
Query: 304 VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGS 483
V C++P G + + S ++ ++ V+EF + NHP DCP+CD+GG+C LQD +++ G
Sbjct: 64 VMTCSIPAQDGQQFRFKSPKAKQIQKAVVEFYMTNHPNDCPVCDEGGDCHLQDTTISVGH 123
Query: 484 DKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
R+ KR + D+ +GPL+ M RC+ C RC+RF + A
Sbjct: 124 AYRRYD----GQKRTMPDQFLGPLVYQTMNRCVTCYRCVRFYQDYA 165
>UniRef50_A3ERJ1 Cluster: NADH-quinone oxidoreductase; n=2;
Leptospirillum|Rep: NADH-quinone oxidoreductase -
Leptospirillum sp. Group II UBA
Length = 903
Score = 142 bits (345), Expect = 5e-33
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 1/162 (0%)
Frame = +1
Query: 136 EVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAAC 315
+V ++ V V P T+L+AA + G+ IP FCYH R+ AG+CR+C VE+E S + V +C
Sbjct: 3 KVTVNGIEVEVDPSYTILKAAEKAGISIPTFCYHPRMDPAGSCRICAVELEDSKRVVMSC 62
Query: 316 AMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSR 495
PV GM+V T S AR+ +E LL++HPLDCP+CD GGEC LQ+ S A+G+ +SR
Sbjct: 63 VTPVSDGMKVLTESPKIHDARKTNLELLLLHHPLDCPVCDCGGECPLQNMSFAYGATESR 122
Query: 496 FTDIHFSGKRAVEDKDV-GPLIKTIMTRCIHCTRCIRFASEV 618
F R E +D+ ++ RCI C +C+R E+
Sbjct: 123 -----FESHRNDEPEDLKSDVLVFNANRCILCGKCVRICDEI 159
>UniRef50_Q3A822 Cluster: NADH dehydrogenase I chain G; n=1;
Pelobacter carbinolicus DSM 2380|Rep: NADH dehydrogenase
I chain G - Pelobacter carbinolicus (strain DSM 2380 /
Gra Bd 1)
Length = 798
Score = 142 bits (343), Expect = 8e-33
Identities = 71/155 (45%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-KPVA-ACA 318
ID+Q V V GT VL+AA Q+G+EIP FC+HE L G CR+C V+V P K + +C
Sbjct: 6 IDNQTVTVPEGTNVLEAARQLGIEIPHFCHHEALGSVGACRLCAVKVIDGPVKGIQMSCM 65
Query: 319 MPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRF 498
+P M V T R V+E+L+ NHP DCP+CD+GGEC LQD ++A G R+
Sbjct: 66 LPAKDDMVVDTGCAEVLAYRAQVIEWLMTNHPHDCPVCDEGGECQLQDMTVAGGHGIRRY 125
Query: 499 TDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIR 603
T KR ++D+GP I M RCI C RC+R
Sbjct: 126 T----GPKRTYRNQDLGPFIAHEMNRCIQCYRCVR 156
>UniRef50_A0LJN7 Cluster: NADH-quinone oxidoreductase; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: NADH-quinone
oxidoreductase - Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB)
Length = 818
Score = 141 bits (342), Expect = 1e-32
Identities = 69/158 (43%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-KPVA-A 312
+ IDD + V GT V++AA ++G+ IPRFCYH L AG CRMC V+ + P K V +
Sbjct: 4 LIIDDLEIEVPQGTKVIEAAERLGIMIPRFCYHHALGSAGACRMCAVKFLQGPFKGVQMS 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C + GM V T + R+ V+E+L++NHP DCP+CD+GG+C LQD++ + G
Sbjct: 64 CMIEAQDGMVVSTTDEEAVSFRKQVIEWLMLNHPHDCPVCDEGGQCLLQDETASSGHGIR 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRF 606
R+ KR D+ +G I M RCIHCTRC+RF
Sbjct: 124 RYA----GRKRTYRDQYLGAFIAHEMNRCIHCTRCVRF 157
>UniRef50_Q746S9 Cluster: NADH-quinone oxidoreductase; n=5;
Geobacter|Rep: NADH-quinone oxidoreductase - Geobacter
sulfurreducens
Length = 677
Score = 140 bits (339), Expect = 2e-32
Identities = 73/161 (45%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-KPVA-ACA 318
ID V V PGT+VL+AA G+ IP FCYH L G CR+C V++ P K + +C
Sbjct: 6 IDHILVEVPPGTSVLEAAKTAGIWIPHFCYHPALGSVGACRLCAVKLLDGPVKGIQMSCM 65
Query: 319 MPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRF 498
+P GM V T K R V+E+L+ NHP DCP+CD+GGEC LQD ++A G RF
Sbjct: 66 LPAQDGMVVSTTDPEALKMRSLVIEWLMTNHPHDCPVCDEGGECLLQDYTVAGGHGIRRF 125
Query: 499 TDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
KR ++D+GP I+ M RCI C RC+RF E A
Sbjct: 126 E----GKKRTHVNQDLGPHIQHEMNRCIQCYRCVRFYQEYA 162
>UniRef50_A5UVG3 Cluster: NADH-quinone oxidoreductase; n=5;
Chloroflexi (class)|Rep: NADH-quinone oxidoreductase -
Roseiflexus sp. RS-1
Length = 918
Score = 136 bits (329), Expect = 4e-31
Identities = 80/189 (42%), Positives = 103/189 (54%), Gaps = 26/189 (13%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEV--------- 285
V + ID Q V V GT ++ AA G+ IP FCYH +L G CRMCLVEV
Sbjct: 4 VTLVIDGQTVTVPAGTNLVDAARMAGIAIPVFCYHPKLKPVGMCRMCLVEVWTPKIDPAT 63
Query: 286 -----EKSPKPVAA---------CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC 423
+ KPV A C PV +GM V+T + R A++G +EFLL +HPLDC
Sbjct: 64 RQVVIGEDGKPVMALMMGKLQPGCVTPVSEGMEVRTTTPQVRFAQKGQLEFLLTSHPLDC 123
Query: 424 PICDQGGECDLQDQSMAFGSDKSRF---TDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTR 594
P+CD+GGEC LQ+ +M FG SRF IHF + +G LI RCI C+R
Sbjct: 124 PVCDKGGECPLQNLTMQFGPSTSRFDYADKIHFE-----KPIPLGDLIYLDRERCILCSR 178
Query: 595 CIRFASEVA 621
C+RF ++A
Sbjct: 179 CVRFQDDIA 187
>UniRef50_A0WB84 Cluster: Molybdopterin oxidoreductase; n=1;
Geobacter lovleyi SZ|Rep: Molybdopterin oxidoreductase -
Geobacter lovleyi SZ
Length = 808
Score = 135 bits (327), Expect = 7e-31
Identities = 62/162 (38%), Positives = 94/162 (58%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + ID V V GTT+L AA ++G++IP C+ E+++ G CR+C V VE +P+ A
Sbjct: 13 ISLTIDGTDVQVPAGTTILDAARKLGIKIPTLCWLEKISTTGACRVCAVHVEGVERPMTA 72
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV +G++V T S K R+ ME +LVNHPLDCP+CD GECDLQD G K
Sbjct: 73 CNTPVKEGIKVTTQSPELEKIRKKTMELMLVNHPLDCPVCDAAGECDLQDTCYGLGVAKQ 132
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ + ++ + L+++ RCI C +C++ E+
Sbjct: 133 EYA----ADLERLQIRYDWSLLESDPNRCILCEKCVKVCREI 170
>UniRef50_Q6MIR8 Cluster: NADH dehydrogenase I chain G; n=1;
Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I
chain G - Bdellovibrio bacteriovorus
Length = 504
Score = 130 bits (315), Expect = 2e-29
Identities = 61/140 (43%), Positives = 85/140 (60%)
Frame = +1
Query: 202 QVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKARE 381
Q G I +C+H L+VAG CR+C+VE+E +P+ AC V +GM++ S+ + A +
Sbjct: 3 QSGDRIAHYCWHPGLSVAGVCRLCMVEIEGNPRVQIACNTMVTEGMKINNTSEKVKDAVK 62
Query: 382 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIK 561
++F L+NHPLDCPICDQ GEC LQDQ M +G + H K V D+GP +
Sbjct: 63 WGLDFHLINHPLDCPICDQAGECGLQDQYMEYGKYDPEMAE-HKQKKHKV--VDLGPTVV 119
Query: 562 TIMTRCIHCTRCIRFASEVA 621
RCI C+RC+RF EV+
Sbjct: 120 LDSERCILCSRCVRFTEEVS 139
>UniRef50_Q9RU93 Cluster: NADH-quinone oxidoreductase; n=2;
Deinococcus|Rep: NADH-quinone oxidoreductase -
Deinococcus radiodurans
Length = 730
Score = 128 bits (310), Expect = 8e-29
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKS------ 294
++V +D P+ + GT+ + A G ++P FC H L+ G CRMCLVE
Sbjct: 1 MKVTVDGVPLDLPAGTSGIDAVFAAGRDVPYFCAHSYLSPVGACRMCLVESGSPRKGKDG 60
Query: 295 ---------------PKPVAACAMPVMKGMRVKT--NSDLTRKAREGVMEFLLVNHPLDC 423
PKP+AAC M +GM +KT S++ K++ G+MEF L+NHPLDC
Sbjct: 61 NFELDEQGEVKIFWFPKPMAACTMQATEGMHIKTAATSEVVAKSQAGMMEFTLLNHPLDC 120
Query: 424 PICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIR 603
P CD+GG C+LQD++ +G SRF F + A + + + RCIHC RC+R
Sbjct: 121 PTCDKGGACELQDRAFEYGYGASRF---GFDRRHADKHYPLSDFVILDQERCIHCKRCVR 177
Query: 604 FASEV 618
+ EV
Sbjct: 178 YFEEV 182
>UniRef50_Q2YAA0 Cluster: NADH-quinone oxidoreductase; n=2;
Bacteria|Rep: NADH-quinone oxidoreductase - Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849)
Length = 942
Score = 127 bits (307), Expect = 2e-28
Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 5/166 (3%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLV-----EVEKSPKP 303
+ ID++P G +LQ +G +P FC+H L G CR C + E +K K
Sbjct: 4 IHIDNRPYPAKEGENLLQECLSLGFNLPYFCWHPALGSVGACRQCAIKQFKNEEDKHGKI 63
Query: 304 VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGS 483
V AC G+R+ + ++ R V E+L+VNHP DCP+CD+GGEC LQD ++ G
Sbjct: 64 VMACMTAAKDGIRISIDDPEAQEFRASVAEWLMVNHPHDCPVCDEGGECHLQDMTVMNGH 123
Query: 484 DKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
R+ KR ++D+GPL+ M RCI C RC RF E A
Sbjct: 124 VYRRY----HGRKRTFHNQDLGPLVNHEMNRCIQCYRCTRFYREYA 165
>UniRef50_A6TVG2 Cluster: Molybdopterin oxidoreductase Fe4S4 region;
n=1; Alkaliphilus metalliredigens QYMF|Rep:
Molybdopterin oxidoreductase Fe4S4 region - Alkaliphilus
metalliredigens QYMF
Length = 348
Score = 126 bits (305), Expect = 3e-28
Identities = 61/162 (37%), Positives = 91/162 (56%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + ID V V GTT+L+AA+Q+GVEIP FC+ RL G+CR+C+VE++ A
Sbjct: 2 IALTIDGMKVQVEAGTTILEAASQLGVEIPTFCHDPRLKPHGSCRICVVEIKGGRNLPTA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV +GM V T SD +AR +++ +L NHPLDC CD+ G C LQD + +S
Sbjct: 62 CCTPVGEGMEVWTESDDVIEARREILDLMLANHPLDCLTCDKAGRCTLQDLCYKYDIKES 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ K+ E + P + +CI C +C+ S++
Sbjct: 122 SYG----GAKKEYETDESNPFYYSDQEKCILCGKCVYVCSQL 159
>UniRef50_Q56223 Cluster: NADH-quinone oxidoreductase subunit 3;
n=2; Thermus thermophilus|Rep: NADH-quinone
oxidoreductase subunit 3 - Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579)
Length = 783
Score = 126 bits (304), Expect = 4e-28
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 31/193 (16%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLV----------- 279
V V ++D+ V V PGT+V+ A G ++P FC + L+ G CRMCLV
Sbjct: 2 VRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDG 61
Query: 280 ----------EVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPI 429
E++ PK A+C V GM V T SD+ R+A+ G++EF L+NHPLDCP
Sbjct: 62 KPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPT 121
Query: 430 CDQGGECDLQDQSMAFG----------SDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRC 579
CD+GG C+LQD+++ +G + +T F+ + + + P + RC
Sbjct: 122 CDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRERC 181
Query: 580 IHCTRCIRFASEV 618
IHC RC+R+ EV
Sbjct: 182 IHCKRCVRYFEEV 194
>UniRef50_A5FSK7 Cluster: Hydrogenase, Fe-only; n=9; Bacteria|Rep:
Hydrogenase, Fe-only - Dehalococcoides sp. BAV1
Length = 573
Score = 125 bits (302), Expect = 7e-28
Identities = 62/162 (38%), Positives = 90/162 (55%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + ID++ V V GTT+LQAA + + IP CY E L CR+C+VE+E P+ +
Sbjct: 2 VTLNIDNKQVTVPEGTTILQAAKEANINIPHLCYFEGLKSYSGCRVCVVEIEGEPRLATS 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C+ V +GM+V T+S R+AR ++E LL NHP DC C++ CDL + G K
Sbjct: 62 CSRKVAEGMKVNTHSARVRRARRTILEILLANHPQDCFNCERNQNCDLLRLAFECGVKKL 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
RF + S KR + + P I +CI C RC+R ++
Sbjct: 122 RFEE---SEKRVLPIDNTSPSIIRDPNKCIACGRCVRVCHDI 160
>UniRef50_Q63RZ1 Cluster: NAD-dependent formate dehydrogenase alpha
subunit; n=78; Bacteria|Rep: NAD-dependent formate
dehydrogenase alpha subunit - Burkholderia pseudomallei
(Pseudomonas pseudomallei)
Length = 984
Score = 124 bits (300), Expect = 1e-27
Identities = 67/183 (36%), Positives = 97/183 (53%), Gaps = 2/183 (1%)
Frame = +1
Query: 73 RAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAV 252
RA P + + V + ID + V V GT+V++AA + G+ +P+ C + L
Sbjct: 28 RADPFDDTDYGTPTRHADTDVTLDIDGRAVTVPAGTSVMRAAIEAGINVPKLCATDSLEP 87
Query: 253 AGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPIC 432
G+CR+CLVE+E A+C PV GM+V+T SD + R VME + +HPLDC C
Sbjct: 88 FGSCRLCLVEIEGRRGYPASCTTPVEAGMKVRTQSDRLQALRRNVMELYISDHPLDCLTC 147
Query: 433 DQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVED-KD-VGPLIKTIMTRCIHCTRCIRF 606
G+C+LQD + A G + R+ F GK + D KD P ++CI C RC+R
Sbjct: 148 AANGDCELQDMAGAVGLREVRY---GFDGKNHLSDAKDESNPYFSYDPSKCIVCNRCVRA 204
Query: 607 ASE 615
E
Sbjct: 205 CEE 207
>UniRef50_Q89AU1 Cluster: NADH-quinone oxidoreductase subunit G;
n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
NADH-quinone oxidoreductase subunit G - Buchnera
aphidicola subsp. Baizongia pistaciae
Length = 907
Score = 124 bits (298), Expect = 2e-27
Identities = 60/161 (37%), Positives = 94/161 (58%), Gaps = 5/161 (3%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEV-----EKSPKP 303
+F+D++ +V +LQA G+ IP FC+H L G+CR C V + +K +
Sbjct: 4 IFVDNEEYNVDKSDNLLQACLSSGINIPYFCWHPVLGSIGSCRQCAVTIYKDLEDKVGQL 63
Query: 304 VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGS 483
V +C V+ GM V T+ ++R R+G++E L++NHP DCPIC++GG C LQD ++ G
Sbjct: 64 VMSCMTSVLDGMIVSTSDKISRNFRKGIIELLMLNHPHDCPICEEGGSCHLQDMTVMAGH 123
Query: 484 DKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRF 606
R+ F+ KR +++ +G I M RCI C RC+R+
Sbjct: 124 TVRRY---RFT-KRTHKNQYLGHFITHEMNRCISCYRCVRY 160
>UniRef50_Q1K3H6 Cluster: Molybdopterin oxidoreductase; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Molybdopterin
oxidoreductase - Desulfuromonas acetoxidans DSM 684
Length = 834
Score = 123 bits (297), Expect = 3e-27
Identities = 59/162 (36%), Positives = 90/162 (55%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + ID Q V V G T++ AA ++G++IP CY ++++ G CR+CLV VE V A
Sbjct: 2 VNLTIDGQQVQVEEGQTIISAAEKLGIKIPTMCYLKKVSTTGACRVCLVNVEGVEGSVTA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C +G+ V T + R+ ++ +LVNHPLDCP+CD GECDLQD G
Sbjct: 62 CNTVATEGIVVTTTGEELVNKRKDMIRLMLVNHPLDCPVCDAAGECDLQDICYEHGILDQ 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
FT + + + PLI+ + +RC+ C +C++ E+
Sbjct: 122 PFTAEDVAAAKITD----WPLIENVPSRCVLCEKCVKVGYEL 159
>UniRef50_Q2RHA1 Cluster: Ferredoxin; n=2; Clostridia|Rep:
Ferredoxin - Moorella thermoacetica (strain ATCC 39073)
Length = 307
Score = 122 bits (295), Expect = 5e-27
Identities = 61/162 (37%), Positives = 92/162 (56%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + I+D+ V V GTT+L+AA ++ + IP C+ +RL+ G CR+C+VEV AA
Sbjct: 4 VSLTINDKKVRVPAGTTILEAARELNITIPTLCHDKRLSPFGACRLCVVEVRGRKNLPAA 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV +GM V T S +AR ++E LL NHPLDC C++ G C LQD + +G ++
Sbjct: 64 CVTPVEEGMTVLTESPAVVEARRTIIELLLANHPLDCLTCEKSGNCRLQDYAYRYGVKRT 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
F + ++D + P I +CI C +C+R E+
Sbjct: 124 PFEGTR--DQLPLDDNN--PFIIRDPNKCILCGKCVRACQEI 161
>UniRef50_Q608Y2 Cluster: NADH-quinone oxidoreductase; n=5;
Bacteria|Rep: NADH-quinone oxidoreductase -
Methylococcus capsulatus
Length = 929
Score = 122 bits (294), Expect = 7e-27
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP----- 297
+ + ID + V G +LQA +G+++P FC+H + G CR C V K
Sbjct: 41 LHIEIDGKSHPVKAGENLLQAILSLGLDLPYFCWHPAMGSVGACRQCGVIQFKDANDAQG 100
Query: 298 KPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF 477
+ V AC PV +GMR+ + R G++E L+ NHP DCP+C++GGEC LQD ++
Sbjct: 101 RVVMACMTPVAEGMRISLQGPDAKAFRAGILELLMTNHPHDCPVCEEGGECHLQDMTVMT 160
Query: 478 GSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRF 606
G ++ + KR ++D+GP I M RCI C RC+R+
Sbjct: 161 GHTVRQYRGL----KRTHRNQDLGPFINHEMNRCIACYRCVRY 199
>UniRef50_A4U8S2 Cluster: NADH-quinone oxidoreductase; n=1;
Theonella swinhoei bacterial symbiont clone pSW1H8|Rep:
NADH-quinone oxidoreductase - Theonella swinhoei
bacterial symbiont clone pSW1H8
Length = 811
Score = 121 bits (291), Expect = 2e-26
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 23/185 (12%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEV--------- 285
+ V +D + + PGT+ + A G ++P FC E ++ G CR+CL +
Sbjct: 1 MRVRVDGVELELAPGTSAIDAVFAAGFDLPYFCSQEYMSPIGACRLCLARLGAPRRDRVS 60
Query: 286 ------EKSPKP--------VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC 423
E++ +P +A C V++GM + T S+ R A+ +MEF L+NHPLDC
Sbjct: 61 GDWILDEETGEPKIFYFPNLMATCTTAVIEGMVIDTRSEEVRAAQRSMMEFTLINHPLDC 120
Query: 424 PICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIR 603
P+CD+GG C+LQD++ +GS SRF F + + + LI RCIHC RC+R
Sbjct: 121 PVCDKGGACELQDRAYEYGSGLSRFV---FDKRHQEKHHALSGLITLDRERCIHCKRCVR 177
Query: 604 FASEV 618
+ EV
Sbjct: 178 YFEEV 182
>UniRef50_Q67JF9 Cluster: Iron hydrogenase; n=31; Bacteria|Rep: Iron
hydrogenase - Symbiobacterium thermophilum
Length = 596
Score = 120 bits (290), Expect = 2e-26
Identities = 64/162 (39%), Positives = 86/162 (53%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + ID +PV V PGTTVL+AA Q G+ IP CY + + G CRMCLVEVE + A
Sbjct: 10 IHLTIDRRPVSVEPGTTVLEAARQNGIHIPTLCYLKDINKIGACRMCLVEVEGARGLQTA 69
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C P +GM V TNS R+AR+ V+E LL +H ++CP C + G C+L + G
Sbjct: 70 CTTPCTEGMVVHTNSPAVREARKLVLELLLSDHNIECPTCLRAGNCELMQLAQEMGVRTV 129
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
H R VE I ++C+ C RC+ EV
Sbjct: 130 PLKGAHHQVHRDVE----SGAIAVDSSKCVLCQRCVAVCREV 167
>UniRef50_UPI00015BCE9F Cluster: UPI00015BCE9F related cluster; n=1;
unknown|Rep: UPI00015BCE9F UniRef100 entry - unknown
Length = 622
Score = 120 bits (288), Expect = 4e-26
Identities = 52/159 (32%), Positives = 87/159 (54%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
E V +FID + G +L+ VG+E+P FCY +RL G+CR+C+V VE + +
Sbjct: 2 ETVSIFIDGKEYKAPKGENLLKYMLSVGIEVPYFCYLDRLPALGSCRLCIVLVENQNRVI 61
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
+C + + +G+RV T + ++ + +++ + HPLDCPICD+ GECDLQ+ +G
Sbjct: 62 PSCTLQIQEGLRVSTQAKAVKENQAYLLQAYMTRHPLDCPICDKAGECDLQNYGALYG-P 120
Query: 487 KSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIR 603
+++ + K E ++ RC+ C RC R
Sbjct: 121 QTQIVPVSALEKHREEHDWQSDYLEYYSNRCVVCYRCTR 159
>UniRef50_Q28P87 Cluster: Formate dehydrogenase alpha subunit; n=27;
Proteobacteria|Rep: Formate dehydrogenase alpha subunit
- Jannaschia sp. (strain CCS1)
Length = 973
Score = 119 bits (287), Expect = 5e-26
Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 14/176 (7%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + +D V V GT+V++AA+++G++IP+ C + L G+CR+C+VE+E A+
Sbjct: 23 VTLTVDGFEVTVPEGTSVMRAASEIGMQIPKLCASDNLEAFGSCRLCVVEIEGRRGTPAS 82
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV +GM V+T S +K R GVME + +HPLDC C G+C+LQD + A G
Sbjct: 83 CTTPVAEGMVVRTQSSKVKKIRRGVMELYISDHPLDCLTCAANGDCELQDMAGAVGLRDV 142
Query: 493 RF-------TDIHFSGKRA-------VEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
R+ HF ++ + D P +CI C+RC+R EV
Sbjct: 143 RYEAPENASLANHFEARKGDQPNPEWIPKDDSNPYFTYDPAKCIACSRCVRACEEV 198
>UniRef50_Q3AE47 Cluster: NAD-dependent formate dehydrogenase, alpha
subunit, selenocysteine- containing; n=6; Bacteria|Rep:
NAD-dependent formate dehydrogenase, alpha subunit,
selenocysteine- containing - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 893
Score = 117 bits (282), Expect = 2e-25
Identities = 61/162 (37%), Positives = 87/162 (53%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + I+ V V GTT+L+AA G +IP CY L+ G CR+C+VEV+ + VA+
Sbjct: 4 VTLKINGIEVTVPEGTTILEAAQIAGFKIPTLCYDPELSKPGACRICVVEVKGARNLVAS 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV GM V T+S+ AR +++ LL NHP DC CD+ GEC L D + +G +
Sbjct: 64 CVTPVAPGMEVLTHSEPVINARREILDLLLSNHPEDCLTCDKMGECALADYAYEYGVRRG 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ K +D P I M +CI C +C+R E+
Sbjct: 124 SYQ----GEKNVYPIEDNNPFIVRDMNKCILCGKCVRVCDEI 161
>UniRef50_Q8ZDL2 Cluster: NADH-quinone oxidoreductase subunit G;
n=78; Gammaproteobacteria|Rep: NADH-quinone
oxidoreductase subunit G - Yersinia pestis
Length = 914
Score = 117 bits (281), Expect = 3e-25
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP-----KP 303
+ +D + V +LQA +G++IP FC+H L G CR C V+ ++ +
Sbjct: 4 IHVDGKEYDVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNADDTRGRL 63
Query: 304 VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGS 483
V +C P G + + + RE V+E+L+ NHP DCP+C++GG C LQD ++ G
Sbjct: 64 VMSCMTPATDGTFISIDDSEAKAFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGH 123
Query: 484 DKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
R+ F+ KR +++D+GP I M RCI C RC+R+ + A
Sbjct: 124 SFRRY---RFT-KRTHQNQDLGPFISHEMNRCIACYRCVRYYKDYA 165
>UniRef50_Q6N1Z3 Cluster: NADH-ubiquinone dehydrogenase chain G
precursor; n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
dehydrogenase chain G precursor - Rhodopseudomonas
palustris
Length = 877
Score = 116 bits (280), Expect = 3e-25
Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 5/169 (2%)
Frame = +1
Query: 130 KVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP---- 297
K ++ ID + + G +L A G+++P FC+H L G CR C V+V P
Sbjct: 3 KKKIEIDGRVIEAKDGEDLLSACLTHGIDVPYFCWHGALGSVGACRQCAVKVYDGPDDTE 62
Query: 298 -KPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMA 474
+ V +C PV RV R V+E+L+VNHP DCP+C++ G C LQD ++A
Sbjct: 63 GRIVMSCMTPVADVERVSVTDPEAVAFRAQVIEWLMVNHPHDCPVCEEAGSCHLQDMTIA 122
Query: 475 FGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
G R+ F+ KR ++D+GPL+ M RCI C RC RF + A
Sbjct: 123 TGHIDRRY---KFT-KRTHRNQDLGPLVTHEMNRCIACYRCTRFYRDYA 167
>UniRef50_Q2S5I6 Cluster: NADH dehydrogenase i, g subunit; n=2;
Sphingobacteriales genera incertae sedis|Rep: NADH
dehydrogenase i, g subunit - Salinibacter ruber (strain
DSM 13855)
Length = 579
Score = 116 bits (279), Expect = 5e-25
Identities = 70/187 (37%), Positives = 95/187 (50%), Gaps = 32/187 (17%)
Frame = +1
Query: 157 PVHVVPGTT--------VLQAAAQVGVEIPRFCYHERLAVAGNCRMCLV----------- 279
P+ V GTT +LQ G+E+P FCYH +++ NCR CLV
Sbjct: 2 PIVTVDGTTYEYEGEQKLLQFCLNQGIELPHFCYHPAMSIPANCRQCLVKVGMPKEDRET 61
Query: 280 -----------EVEKSPKPVAACAMPVMKGMRVKTN--SDLTRKAREGVMEFLLVNHPLD 420
E++ P+ A+C + + GM VKT+ S+ +A+ +EFLL NHPLD
Sbjct: 62 GEVVRNEEGEPEIQYFPQLQASCTVDLQDGMVVKTHRTSEEVEQAQTDNLEFLLTNHPLD 121
Query: 421 CPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCI 600
CPICDQ G C LQ QS +G + SRF F + +GP + RCI+CTRC
Sbjct: 122 CPICDQAGHCPLQIQSYKYGPEGSRF---EFRKVHKPKRVKLGPRVTLDAERCINCTRCT 178
Query: 601 RFASEVA 621
RF EV+
Sbjct: 179 RFTDEVS 185
>UniRef50_Q93SF1 Cluster: FdhB-II protein; n=4; Bacteria|Rep:
FdhB-II protein - Eubacterium acidaminophilum
Length = 317
Score = 116 bits (279), Expect = 5e-25
Identities = 60/163 (36%), Positives = 92/163 (56%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + I+ Q V V +T+++AAA++G+EIP CY E L G CR+C+V+V+ + + A
Sbjct: 2 VTLTINGQSVSVSRKSTIIEAAAKLGIEIPALCYDENLEPVGACRLCVVDVQGARGLLTA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C+ PV +GM V+T ++ AR GV+ LL NHP DC C++ G C LQ S +
Sbjct: 62 CSTPVAEGMVVETETERVIDARRGVLRLLLDNHPNDCLTCEKAGSCLLQKYSYKY---DV 118
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+F +RA D P I ++CI C +C+R +V+
Sbjct: 119 KFDASAKGARRAGLLDDSNPYIMRDDSKCILCGKCVRICGQVS 161
>UniRef50_A6Q1P9 Cluster: NADH-quinone oxidoreductase, chain G; n=2;
unclassified Epsilonproteobacteria|Rep: NADH-quinone
oxidoreductase, chain G - Nitratiruptor sp. (strain
SB155-2)
Length = 758
Score = 115 bits (277), Expect = 8e-25
Identities = 59/162 (36%), Positives = 88/162 (54%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V+ ID + V G T+LQ A + G+ IP CY ++ +CR+C+VEVE V +
Sbjct: 2 VKFTIDGRTVTAQKGETILQVARREGIYIPTMCYLTKVKPIESCRLCVVEVEGVDGFVLS 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV+ + V+TNS+ K R+ +M VNHPL+C +CD+ GECDLQ++++ FG D
Sbjct: 62 CQTPVVPDIEVRTNSEELYKHRQNIMRLYDVNHPLECGVCDKSGECDLQNKTLEFGVDTQ 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
FT K I+ + CI C +C+ +EV
Sbjct: 122 EFT-----AKDQYRPIQKWNYIQYDPSLCILCEKCVHVCNEV 158
>UniRef50_Q1PWG5 Cluster: Similar to molybdopterin oxidoreductase,
molybdopterin-containing subunit/ NuoG subunit of NADH
dehydrogenase I; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to molybdopterin
oxidoreductase, molybdopterin-containing subunit/ NuoG
subunit of NADH dehydrogenase I - Candidatus Kuenenia
stuttgartiensis
Length = 890
Score = 115 bits (276), Expect = 1e-24
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEK--SPKPV 306
+ + IDD+ + GT + QAA + IP CYH +L+ G CR+C VEV + +
Sbjct: 4 IHLTIDDKSIVAPEGTNIFQAALDNNIYIPGLCYHPKLSQFGGCRLCYVEVTERNQTRRR 63
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
ACA PV +GM VK N+ + R+ VME+LL +H L CP C++ GEC LQ+ + S
Sbjct: 64 FACAHPVSEGMSVKVNTAEVNRHRKAVMEYLLAHHELACPTCNKSGECGLQNIAHEQESP 123
Query: 487 KSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
RF S + D P+++ RC+ C RC+ E+
Sbjct: 124 LGRFKTARMSAP-VIRD---NPVLELNRNRCVLCGRCVNACKEI 163
>UniRef50_A0J5R9 Cluster: NADH-quinone oxidoreductase, chain G
precursor; n=1; Shewanella woodyi ATCC 51908|Rep:
NADH-quinone oxidoreductase, chain G precursor -
Shewanella woodyi ATCC 51908
Length = 947
Score = 114 bits (275), Expect = 1e-24
Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKP--- 303
+ + ID+Q V +LQA +G+++P FC+H + G+CR C V ++ +
Sbjct: 17 ISLTIDNQSYSVEKRQNLLQACLSLGLDLPYFCWHPAMGSVGSCRQCAVTQYQNSEDTRG 76
Query: 304 --VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF 477
V +C P+ +GM + D +++ RE +E ++ NHP DCP+C++GG C LQD ++
Sbjct: 77 RLVMSCMTPLTEGMIISLKDDKSQQFRETNIEAIMTNHPHDCPVCEEGGNCHLQDMTL-M 135
Query: 478 GSDKSRFTDIHFSGKRAVE-DKDVGPLIKTIMTRCIHCTRCIRF 606
G +R +SGK+ ++ +GPL+ M RCI C RC+RF
Sbjct: 136 GKHINR----RYSGKKRTHLNQFLGPLLNHEMNRCIGCYRCVRF 175
>UniRef50_Q4FU59 Cluster: NADH-quinone oxidoreductase; n=3;
Psychrobacter|Rep: NADH-quinone oxidoreductase -
Psychrobacter arcticum
Length = 1030
Score = 114 bits (274), Expect = 2e-24
Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 8/169 (4%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA-- 312
+ ID V V +LQA +G+++P FCYH L G+CR C V+ + + + A
Sbjct: 4 IHIDGTTVEVDSADNLLQACLSLGIDVPYFCYHPALGSVGSCRQCAVKQYMTKEDMEAGR 63
Query: 313 ------CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMA 474
C + M + D + R+ ++E L++NHP DCP C++GG C LQD +
Sbjct: 64 GRLVMSCMVAPGDDMYISVTDDEAKAFRKSMVELLMINHPHDCPTCEEGGHCHLQDMTYM 123
Query: 475 FGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
G + R+ F+ KR ++++GP I M RCI C RC+RF + A
Sbjct: 124 SGHHRRRY---RFT-KRTHHNQELGPFIAHEMNRCIACYRCVRFYKDYA 168
>UniRef50_Q057X0 Cluster: NADH-quinone oxidoreductase; n=1; Buchnera
aphidicola str. Cc (Cinara cedri)|Rep: NADH-quinone
oxidoreductase - Buchnera aphidicola subsp. Cinara cedri
Length = 912
Score = 111 bits (268), Expect = 1e-23
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKP--- 303
V++FID + V +LQA G +P FC+H L G CR C V+V ++ +
Sbjct: 2 VKIFIDGKIFFVKSSYNLLQACLSKGFNVPFFCWHPALGSIGACRQCAVKVYQNKEDDVG 61
Query: 304 --VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF 477
V +C V K MR+ +K ++ ++E +++NHP DCP+C +GG C LQD ++
Sbjct: 62 SIVMSCMSVVQKNMRISLIDSDVKKFQKDIIELMMLNHPHDCPVCAEGGSCHLQDMTVL- 120
Query: 478 GSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRF 606
+K F KR +++ +GPLI M RCI C RCIR+
Sbjct: 121 --NKHHIRRYIFK-KRIFKNQYLGPLISHNMNRCITCYRCIRY 160
>UniRef50_Q835I7 Cluster: NAD-dependent formate dehydrogenase, alpha
subunit; n=12; cellular organisms|Rep: NAD-dependent
formate dehydrogenase, alpha subunit - Enterococcus
faecalis (Streptococcus faecalis)
Length = 906
Score = 111 bits (267), Expect = 1e-23
Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKP- 303
+ V + ID+Q V V GTT+L+AA +GVEIP C+ + LA G+CRMC+VEVE +
Sbjct: 8 QTVTLSIDNQEVTVPKGTTILEAAKGLGVEIPTLCHLKELAPDGSCRMCVVEVEGGRRGG 67
Query: 304 -VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 480
AC + M V T+S+ +R +++ LL NH L+C C + G+C LQ ++ +G
Sbjct: 68 LTTACTAHCQEDMVVATHSEKVADSRRFILDLLLSNHKLECFSCGKNGDCQLQQYALDYG 127
Query: 481 SDKSRFTDIHFSGKR--AVEDKDVGPLIKTIMTRCIHCTRCIR 603
D + FT+ GKR ++ P +CI C RC R
Sbjct: 128 IDVTSFTE----GKRMPCHQEDTSNPFFSYDPEKCIMCRRCAR 166
>UniRef50_P74022 Cluster: Hydrogenase subunit; n=9; Bacteria|Rep:
Hydrogenase subunit - Synechocystis sp. (strain PCC
6803)
Length = 238
Score = 110 bits (264), Expect = 3e-23
Identities = 60/162 (37%), Positives = 87/162 (53%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + IDD+ + + G ++LQAA + GV IP C+ E ++ A CR+C+VEVE + K + A
Sbjct: 4 VTLTIDDKAIAIEEGASILQAAKEAGVPIPTLCHLEGISEAAACRLCMVEVEGTNKLMPA 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C V + M V TN++ + R +E L C IC G C+LQD ++ G D S
Sbjct: 64 CVTAVSEEMVVHTNTEKLQNYRRMTVELLFSEGNHVCAICVANGNCELQDMAITVGMDHS 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
RF + KR V+ P+ RCI CTRC+R E+
Sbjct: 124 RFK--YQFPKREVDLSH--PMFGIDHNRCILCTRCVRVCDEI 161
>UniRef50_Q8YYT4 Cluster: Hydrogenase chain U; n=22; Bacteria|Rep:
Hydrogenase chain U - Anabaena sp. (strain PCC 7120)
Length = 238
Score = 109 bits (261), Expect = 7e-23
Identities = 57/158 (36%), Positives = 81/158 (51%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
I+DQ + T+LQAA + G+ IP C+ E + G CR+CLVE+ S K + AC
Sbjct: 8 INDQLISAQEEETLLQAAQEAGIHIPTLCHLEGVGDVGACRLCLVEITGSNKLLPACVTK 67
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTD 504
V +GM V+TNSD +K R ++E L C +C C+LQD ++ G D R +
Sbjct: 68 VAEGMEVRTNSDRLQKYRRTIVEMLFAEGNHICSVCVANNNCELQDLAIEMGMDHVRL-E 126
Query: 505 IHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
HF ++ D RC+ CTRCIR E+
Sbjct: 127 YHFPNRKVDISHD---RFGVDHNRCVLCTRCIRVCDEI 161
>UniRef50_Q2AG82 Cluster: Ferredoxin:4Fe-4S ferredoxin, iron-sulfur
binding:Iron hydrogenase, small subunit:Hydrogenase
large subunit, C-terminal; n=14; Bacteria|Rep:
Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron
hydrogenase, small subunit:Hydrogenase large subunit,
C-terminal - Halothermothrix orenii H 168
Length = 666
Score = 108 bits (259), Expect = 1e-22
Identities = 55/158 (34%), Positives = 84/158 (53%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
I+ + V + +L+ + G+E+P FCYH L+V G CRMCLVE E++ +A C+
Sbjct: 7 INGKTVAINGEKNLLELIRKQGIELPTFCYHSELSVYGACRMCLVE-EENMGIIATCSTA 65
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTD 504
GM +KT+S ++ R+ +E LL NH DC C + G C LQD + FG D+ RF
Sbjct: 66 PQPGMNIKTHSPRVQRIRKMALELLLANHDRDCTTCSRNGNCKLQDLAQRFGIDEVRFG- 124
Query: 505 IHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ + + + P I +CI C C+R E+
Sbjct: 125 ---TREEVLPVDNSSPSIVRNPNKCILCGDCVRTCQEI 159
>UniRef50_Q9WY44 Cluster: NADP-reducing hydrogenase, subunit D,
putative; n=5; Bacteria|Rep: NADP-reducing hydrogenase,
subunit D, putative - Thermotoga maritima
Length = 608
Score = 106 bits (255), Expect = 4e-22
Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVA-GNCRMCLVEVEKSPKPVA 309
V V I+ + + V TV++A + G+EIP C+H RL + G CR+C+VEVE +
Sbjct: 30 VTVVINGRTLTVPDNLTVIEACEKAGIEIPALCHHPRLGESIGACRVCVVEVEGARNLQP 89
Query: 310 ACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDK 489
AC V GM +KT+SD + AR+ + LL HP DC C+ G C+ QD + +
Sbjct: 90 ACVTKVRDGMVIKTSSDRVKTARKFNLALLLSEHPNDCMTCEANGRCEFQDLIYKYDVEP 149
Query: 490 SRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ K + D+ P I +++CI C RC+R SE+
Sbjct: 150 I----FGYGTKEGLVDRS-SPAIVRDLSKCIKCQRCVRACSEL 187
>UniRef50_Q8TFP2 Cluster: Hydrogenase; n=4; Neocallimastigaceae|Rep:
Hydrogenase - Neocallimastix frontalis (Rumen fungus)
Length = 636
Score = 105 bits (252), Expect = 9e-22
Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 12/194 (6%)
Frame = +1
Query: 58 LTSPVRAAPLTARRFADQVQAQPEK-VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCY 234
L+S + A + + A EK V + I+ + V P TTVL+AA G IP CY
Sbjct: 4 LSSVLNKAVVNPKLTRSLATAAAEKMVNISINGRKFQVKPKTTVLEAAKANGYYIPTLCY 63
Query: 235 HERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHP 414
H+ L VAGNCR+CLV + S KP+ AC V +GM ++T+S + + + HP
Sbjct: 64 HQELPVAGNCRLCLVYAKGSWKPLTACTTEVWEGMEIETDSPAVIETVRSSLSMMREEHP 123
Query: 415 LDCPICDQGGECDLQDQSMAFGSDKS---RFTDIHFSGK--RAVEDKDVGPLIKTI---- 567
DC C G+C+ QD + D R H S K ++ + P T
Sbjct: 124 NDCMTCGSNGDCEFQDLIYRYQIDAKHPVRSLLKHKSKKTNHSITEPCYSPFDNTTFSVA 183
Query: 568 --MTRCIHCTRCIR 603
M +C+ C RCIR
Sbjct: 184 RDMNKCVKCGRCIR 197
>UniRef50_Q24QD4 Cluster: NADH dehydrogenase I chain G; n=8;
Clostridiales|Rep: NADH dehydrogenase I chain G -
Desulfitobacterium hafniense (strain Y51)
Length = 378
Score = 104 bits (250), Expect = 1e-21
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 1/165 (0%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
E + + ID++ V V G+TVL+A + IP C L AG CR+C+VE+
Sbjct: 28 EWLNLTIDEKEVVVPKGSTVLEACRMHDIPIPTLCQDPELTNAGACRLCIVEIAGMRNLP 87
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
+C V +GM VKT + RK+R+ ++E L+ NHPLDC C + G+C L + +G
Sbjct: 88 PSCVTQVTQGMVVKTQTPKVRKSRKVILELLVANHPLDCMTCQKMGDCALAQYAYEYG-- 145
Query: 487 KSRFTDIHFSG-KRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
T + G +R + D P I +CI C +C+R E+
Sbjct: 146 ---VTGEDYRGERRELPLDDSNPFILRDPNKCILCGKCVRACEEI 187
>UniRef50_Q7VRV7 Cluster: NADH-quinone oxidoreductase subunit G;
n=2; Candidatus Blochmannia|Rep: NADH-quinone
oxidoreductase subunit G - Blochmannia floridanus
Length = 941
Score = 104 bits (250), Expect = 1e-21
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKS------ 294
+ ++I+++ V VL+ +G +P FC+H L G+CR C V++ +
Sbjct: 3 IPIYIEEKKYMVEDTKNVLEVCLSLGFNVPYFCWHPALGSIGSCRQCAVKLYDNLHCVPD 62
Query: 295 ------PKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDL 456
+ V +C PV+K M + ++ R+ ++E L+VNHP DCP+C++GG C L
Sbjct: 63 SKHINFGRLVMSCMTPVIKDMYISLFDKELQEFRKNILELLMVNHPHDCPVCEEGGNCHL 122
Query: 457 QDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
QD ++ R+ F+ KR ++ +GP I M RCI C RC+R+ + A
Sbjct: 123 QDMAVMVEHTYRRY---RFT-KRTHYNQYLGPFITHEMNRCITCYRCVRYYKDYA 173
>UniRef50_O52683 Cluster: Fe-hydrogenase alpha subunit; n=3;
Thermotogaceae|Rep: Fe-hydrogenase alpha subunit -
Thermotoga maritima
Length = 645
Score = 103 bits (246), Expect = 5e-21
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGT-TVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVA 309
+++++D + V + +L+A VG+EIP CY ++ G CRMCLVE+ + +
Sbjct: 1 MKIYVDGREVIINDNERNLLEALKNVGIEIPNLCYLSEASIYGACRMCLVEI--NGQITT 58
Query: 310 ACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDK 489
+C + +GM+VKTN+ + R ++E +L H DC CD+ G C LQ + FG K
Sbjct: 59 SCTLKPYEGMKVKTNTPEIYEMRRNILELILATHNRDCTTCDRNGSCKLQKYAEDFGIRK 118
Query: 490 SRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
RF + K V D+ P+++ ++CI C C+R E+
Sbjct: 119 IRFEALK---KEHVRDES-APVVRD-TSKCILCGDCVRVCEEI 156
>UniRef50_A0LK82 Cluster: Molybdopterin oxidoreductase; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: Molybdopterin
oxidoreductase - Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB)
Length = 880
Score = 103 bits (246), Expect = 5e-21
Identities = 55/159 (34%), Positives = 83/159 (52%)
Frame = +1
Query: 142 FIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAM 321
+ID + V G TV++AA ++GV IPR C+H L +G+CR+C VE++ AAC+
Sbjct: 4 WIDGRQVRAKSGLTVMEAADELGVVIPRLCFHPALRPSGSCRLCAVEIDDFRGLPAACST 63
Query: 322 PVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFT 501
PV GMRV+T + R ++ +L +HP +C C + G C+LQ G D ++
Sbjct: 64 PVEPGMRVRTATARVLDFRREMLRVILQDHPRECLGCPRNGTCELQRLVETVGID-FPYS 122
Query: 502 DIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
F RA + G + C+ C RC+R EV
Sbjct: 123 PEEFGRHRA---EQAGRYFERDYDLCVRCGRCVRVCHEV 158
>UniRef50_Q7MA46 Cluster: NADH-UBIQUINONE OXIDOREDUCTASE, NQO3
SUBUNIT NQO3; n=1; Wolinella succinogenes|Rep:
NADH-UBIQUINONE OXIDOREDUCTASE, NQO3 SUBUNIT NQO3 -
Wolinella succinogenes
Length = 746
Score = 101 bits (243), Expect = 1e-20
Identities = 55/162 (33%), Positives = 87/162 (53%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + ID + G T+L+AA + V IP C+ +L+ +CR+CLVE S + +
Sbjct: 2 VRLRIDGIEIRARQGETILKAARRAKVHIPTLCHLSKLSPIASCRLCLVEERGSAGYLLS 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C PV +GM + T S + R +M+F +NHPL+C +CD+ GEC+LQ++ ++
Sbjct: 62 CQTPVKEGMEIATKSRALEEHRLQLMQFYAMNHPLECGVCDKSGECELQNRVHELRVNEQ 121
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
F + RA+E G I + CI C RC+R +E+
Sbjct: 122 PFAAREKA--RALETWKGG--ISYDESLCIVCERCVRVCNEL 159
>UniRef50_A4J529 Cluster: Hydrogenases, Fe-only; n=3;
Clostridiales|Rep: Hydrogenases, Fe-only -
Desulfotomaculum reducens MI-1
Length = 659
Score = 101 bits (241), Expect = 2e-20
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Frame = +1
Query: 136 EVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAAC 315
++ I+ Q + +L A +VG++IP CYH L +AG CR+C+VE+E+ A+C
Sbjct: 4 KITINGQIIDFTDEKNILAVARKVGIDIPTLCYHPELTIAGACRLCVVEIERMGVQ-ASC 62
Query: 316 AMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSR 495
+ GM V TNS+ + R+ V+E LL NH +C CD G C LQ + +G + R
Sbjct: 63 STAPTDGMVVYTNSEKVNRVRKMVLELLLANHDRECTTCDSSGACKLQKYANDYGIKRLR 122
Query: 496 FTDIHFSGKRAVEDKDVGPL-IKTIMTRCIHCTRCIRFASE 615
+ + + + D L I +CI C C+R E
Sbjct: 123 YPN-----RTTMAPLDTSSLSIVRDPNKCILCGLCVRVCKE 158
>UniRef50_Q2LS99 Cluster: Formate dehydrogenase, iron-sulfur
subunit; n=1; Syntrophus aciditrophicus SB|Rep: Formate
dehydrogenase, iron-sulfur subunit - Syntrophus
aciditrophicus (strain SB)
Length = 352
Score = 98.3 bits (234), Expect = 1e-19
Identities = 50/164 (30%), Positives = 81/164 (49%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
+++++ ID + V G T+L+ A G++IP CYH +++ G CR+CLV V
Sbjct: 2 QQIKLSIDGKEVTGTAGQTILEIALASGIDIPTLCYHPKISKTGACRLCLVRVNNGMLK- 60
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
+C P M+GM + T + R R+G++E LL +C CD G C+LQ +G +
Sbjct: 61 TSCTEPAMEGMSIITEDEEIRGIRKGILELLLSEGDHNCLYCDANGACELQTLVNRYGIE 120
Query: 487 KSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
F V D + +K RC+ C RC++ E+
Sbjct: 121 P---VSSDFPRNVRVIDYESSEGLKRNENRCVLCGRCVKACGEI 161
>UniRef50_Q604G7 Cluster: Formate dehydrogenase, alpha subunit; n=8;
Proteobacteria|Rep: Formate dehydrogenase, alpha subunit
- Methylococcus capsulatus
Length = 925
Score = 95.5 bits (227), Expect = 9e-19
Identities = 56/157 (35%), Positives = 78/157 (49%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
+D +PV PG +LQAA + GVEIP CY + L GNCR C+VE+E A+C
Sbjct: 11 LDGRPVGARPGEAILQAARRHGVEIPHLCYRDGLRPDGNCRACVVEIEGERVLAASCCRT 70
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTD 504
+GM V+++S R A+ V+E LL D P + + +L+ + G SR
Sbjct: 71 PGEGMEVRSDSPRARSAQRMVVELLLA----DQPETSRSRDDELRQWAERLGVSGSR--- 123
Query: 505 IHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASE 615
F G+ A P I + CI CTRC+R E
Sbjct: 124 --FPGREAPPPDRSNPAIAVQLDACIQCTRCVRACRE 158
>UniRef50_Q30PI4 Cluster: Ferredoxin; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Ferredoxin -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 750
Score = 95.5 bits (227), Expect = 9e-19
Identities = 47/148 (31%), Positives = 74/148 (50%)
Frame = +1
Query: 175 GTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTN 354
G T+L A + G+ IP CY + +CRMC+VE V +C P ++G+ + T
Sbjct: 22 GETILNVARKNGIYIPTMCYISKTTPCASCRMCVVEASGMDGFVLSCNTPPVEGVEITTQ 81
Query: 355 SDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVE 534
S R +M+ VNHPL+C +CD+ G+CDLQ++++ F FS + +
Sbjct: 82 SAALNHERVNIMKLYDVNHPLECGVCDKSGDCDLQNKTLEFNVGHQ-----DFSARDQLR 136
Query: 535 DKDVGPLIKTIMTRCIHCTRCIRFASEV 618
LI + CI C +C+ +EV
Sbjct: 137 PIKHWGLIDYEASLCIMCEKCVHVCNEV 164
>UniRef50_A6Q1Q0 Cluster: NADH-quinone oxidoreductase, chain G; n=3;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain G - Nitratiruptor sp. (strain SB155-2)
Length = 827
Score = 95.5 bits (227), Expect = 9e-19
Identities = 53/164 (32%), Positives = 79/164 (48%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
EK+++ ID + V G VL A G+ IP CY + CR+CLVE + K V
Sbjct: 3 EKIKITIDGKECETVAGEYVLNVARANGIFIPAICYLTSCSPTLACRLCLVEADG--KQV 60
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
AC GM + T ++ K R +ME VNHPL+C +CDQ GEC+LQ+ ++ D
Sbjct: 61 YACNAKAKDGMNIVTVTENILKERRAIMEVYDVNHPLECGVCDQSGECELQNYTLEMKVD 120
Query: 487 KSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ H++ + I + CI C RC+ ++
Sbjct: 121 EQ-----HYAIRDTYRPVKKWNFIHYDSSLCIVCERCVTVCKDM 159
>UniRef50_Q5DUT3 Cluster: Putative NADH-ubiquinone oxidoreductase 75
kDa subunit; n=1; Nyctotherus ovalis|Rep: Putative
NADH-ubiquinone oxidoreductase 75 kDa subunit -
Nyctotherus ovalis
Length = 701
Score = 95.1 bits (226), Expect = 1e-18
Identities = 51/178 (28%), Positives = 88/178 (49%)
Frame = +1
Query: 88 TARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCR 267
TA F + V+V ++ +P+ + TV QA + +IP+ CY E L V G+CR
Sbjct: 8 TAALFPSRSAHNSPFVQVTVNKKPIQIESWATVHQACQKAQTKIPKLCYSEVLGVGGHCR 67
Query: 268 MCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGE 447
CLV+VE AC + V MR+ T++ K +G + F ++ C CD+ GE
Sbjct: 68 ACLVKVEGMANAALACRLKVTPNMRITTSAS---KEIQGALAFTFKDYQGQCNSCDKKGE 124
Query: 448 CDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
C+L+ + ++ + + +++ + GP++ ++CI C RC F +VA
Sbjct: 125 CELESAQLLTTRNELKVGE-------SLDKQYGGPIVYVDTSKCIRCGRCAAFTQQVA 175
>UniRef50_A0LP28 Cluster: Formate dehydrogenase, alpha subunit; n=7;
delta/epsilon subdivisions|Rep: Formate dehydrogenase,
alpha subunit - Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB)
Length = 905
Score = 94.7 bits (225), Expect = 2e-18
Identities = 51/148 (34%), Positives = 74/148 (50%)
Frame = +1
Query: 175 GTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTN 354
G TVL+ G+ +P CYH R+ G CR+C+VE+E +C P GM V T+
Sbjct: 25 GQTVLEVLKDNGIHVPTLCYHPRMPPYGGCRLCIVEIENMRGLPPSCTTPATDGMVVNTH 84
Query: 355 SDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVE 534
S R+ V+E LL +C +C+Q G C+LQ+ G D R F K ++
Sbjct: 85 SPKVVGVRKTVLELLLAYGDHNCLLCEQTGSCELQNLVYEHGIDHVRIKS-EFVPK--IK 141
Query: 535 DKDVGPLIKTIMTRCIHCTRCIRFASEV 618
D D P+I +C+ C RC+R +V
Sbjct: 142 D-DSHPMIVRDHNKCVLCGRCVRACLQV 168
>UniRef50_A6LZW8 Cluster: Ferredoxin; n=1; Clostridium beijerinckii
NCIMB 8052|Rep: Ferredoxin - Clostridium beijerinckii
NCIMB 8052
Length = 702
Score = 93.5 bits (222), Expect = 4e-18
Identities = 49/162 (30%), Positives = 78/162 (48%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
++V ID+ + T++Q A + + IP C+H L G C++C++E+ A
Sbjct: 4 IKVIIDNIELCADENKTIMQVAEEADIYIPHLCHHPDLHDVGGCKLCVIEISGKNDIQTA 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C + +GM VKT S+ + R ME +L NH DC C + +C+LQ G S
Sbjct: 64 CTTKIEEGMIVKTKSEKLDEMRRLSMELMLANHVDDCTTCPKYLKCELQSLIQYLGVSTS 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
R AV + PLI + RC+ C RC+R +++
Sbjct: 124 RLR----RTLNAVPVETENPLIIRDLNRCVACGRCVRACNDI 161
>UniRef50_Q1FFT8 Cluster: Ferredoxin:4Fe-4S ferredoxin, iron-sulfur
binding:Iron hydrogenase, small subunit:Hydrogenase
large subunit-like; n=2; Clostridiales|Rep:
Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron
hydrogenase, small subunit:Hydrogenase large
subunit-like - Clostridium phytofermentans ISDg
Length = 582
Score = 93.1 bits (221), Expect = 5e-18
Identities = 50/160 (31%), Positives = 78/160 (48%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + I+ V G+T+L+AA +EIP CY + + G CR+C+VEV+ + VA+
Sbjct: 4 INLKINGMDVSAPAGSTILEAARLAHIEIPTLCYLKEINEIGACRICVVEVKGARSLVAS 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C P+ +GM V TN+ K+R+ ++ +L NH C C + G+C+LQ G D
Sbjct: 64 CVYPINEGMEVFTNTPKVLKSRKKTLQLILSNHDRRCLSCVRSGDCELQKLCKELGVDDE 123
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFAS 612
D K E + + +CI C RC S
Sbjct: 124 ALYD---GEKGLYELDETAAHMVRDNNKCILCRRCTAVCS 160
>UniRef50_A6PPY6 Cluster: Hydrogenase, Fe-only; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Hydrogenase, Fe-only -
Victivallis vadensis ATCC BAA-548
Length = 676
Score = 92.7 bits (220), Expect = 6e-18
Identities = 49/163 (30%), Positives = 83/163 (50%)
Frame = +1
Query: 130 KVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVA 309
K + +++ V +L+ + G++IP FCYH L++ G CR+CLV++ K +A
Sbjct: 5 KKTLTVNNTEVEFSDERNLLEVIRKAGIDIPTFCYHSELSIYGACRLCLVDI-KGRGIMA 63
Query: 310 ACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDK 489
+C++ GM V+T++ R R+ +E LL +H +CP C + C LQD + G
Sbjct: 64 SCSIKPEPGMVVQTDTKAIRNMRKINVELLLASHNRECPTCQRSANCTLQDLARKLGVKD 123
Query: 490 SRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
R+ + K D L++ +C+ C C+R SEV
Sbjct: 124 VRYKQ---TQKNLPLDTSSPSLVRD-PNKCVLCGDCVRVCSEV 162
>UniRef50_Q8ABI6 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=15; Bacteria|Rep: NADH:ubiquinone oxidoreductase
subunit - Bacteroides thetaiotaomicron
Length = 588
Score = 91.5 bits (217), Expect = 1e-17
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 5/171 (2%)
Frame = +1
Query: 121 QPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVA-----GNCRMCLVEV 285
+ +++ + ID + V G+T+L+AA ++G+ IP C+ + +CR+C+VEV
Sbjct: 2 EEKQITLQIDGHFITVPEGSTILEAACKIGINIPTLCHIDLKGTCIKNNPASCRICVVEV 61
Query: 286 EKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQ 465
ACA +GM VKT++ AR+ V E +L +HP DC C + G C+LQ
Sbjct: 62 AGRRNLAPACATRCTEGMVVKTSTLRVMNARKVVAELILSDHPNDCLTCPKCGNCELQTL 121
Query: 466 SMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
++ F + F G+ + ++V I M +CI C RC ++V
Sbjct: 122 ALRFNIREMPFN----GGELSPRKREVTSSIVRNMDKCIFCRRCESVCNDV 168
>UniRef50_Q7VFS8 Cluster: Donor-ubiquinone reductase I; n=1;
Helicobacter hepaticus|Rep: Donor-ubiquinone reductase I
- Helicobacter hepaticus
Length = 824
Score = 91.1 bits (216), Expect = 2e-17
Identities = 48/156 (30%), Positives = 80/156 (51%)
Frame = +1
Query: 130 KVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVA 309
K+ + I+ Q V V G ++LQ A + G+EIP CY + C++C+V+++ K
Sbjct: 3 KITITINHQSVSCVEGESILQIARREGIEIPAICYLSGCSPTMACKLCMVDIDG--KRNY 60
Query: 310 ACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDK 489
+C +GM + T++ + R +M+ VNHPL C +CD+ GEC+LQ+ ++ K
Sbjct: 61 SCNTKAKEGMNILTHTPEINEERNAIMQSYDVNHPLQCGVCDKSGECELQNYTL-----K 115
Query: 490 SRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRC 597
T+ H+S K + + CI C RC
Sbjct: 116 MNVTNQHYSIKESNKPHKSWAKAVYDPNLCIMCERC 151
>UniRef50_A6GJI1 Cluster: Formate dehydrogenase, alpha subunit; n=1;
Plesiocystis pacifica SIR-1|Rep: Formate dehydrogenase,
alpha subunit - Plesiocystis pacifica SIR-1
Length = 366
Score = 91.1 bits (216), Expect = 2e-17
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+++ ID + V V G+TVL AA ++ +EIP C +R+ AG CRMCLVEVE + +
Sbjct: 6 IKLEIDGREVEVPAGSTVLDAARKLDIEIPTLCMDDRVDPAGCCRMCLVEVEGQRRLHPS 65
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLD---CPICDQGGECDLQDQSMAFGS 483
CA P +G +V T++D + R+G++ +H LD P+ +G L D +G+
Sbjct: 66 CAYPAAEGQKVATHNDRIDRHRKGLLSLYKADHELDQHGRPV-SRGVHNRLADYLDTYGT 124
Query: 484 DKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ T + E + P I+ C+ C C+R+ EV
Sbjct: 125 GPA-LTPVDAPRVARSESLETNPYIQFDPESCVVCGLCVRYCDEV 168
>UniRef50_A5ZW19 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 562
Score = 91.1 bits (216), Expect = 2e-17
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 1/159 (0%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
ID + V VL G++IP CYH L+ G CR+C VE ++ K A+C+
Sbjct: 6 IDGRKVEFTDEKNVLTVIRNAGIDIPTLCYHSELSTFGACRLCTVEDDRG-KTFASCSEV 64
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTD 504
GM + TN++ R R+ ++E LL H DC C + GEC LQ+ + G
Sbjct: 65 PRDGMVIHTNTNKLRNYRKLIVELLLAAHCRDCTTCIKSGECVLQELAHRLG-----VRT 119
Query: 505 IHFSGKRAVEDKDV-GPLIKTIMTRCIHCTRCIRFASEV 618
+ F R + D P I +CI C C+R E+
Sbjct: 120 VRFQNTREQHELDFSSPSIVRDPNKCILCGNCVRACEEI 158
>UniRef50_Q6NDH4 Cluster: Hydrogenase gamma-fused hydrogenase large
and small subunit; n=6; Proteobacteria|Rep: Hydrogenase
gamma-fused hydrogenase large and small subunit -
Rhodopseudomonas palustris
Length = 619
Score = 90.2 bits (214), Expect = 3e-17
Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Frame = +1
Query: 181 TVLQAAAQVGVEIPRFCYHERLA-VAGNCRMCLVEV----EKSPKPVAACAMPVMKGMRV 345
T+L A + V IP C E + G CR+CLVE+ + +P+ V AC PV GM V
Sbjct: 35 TILSCARRYDVYIPTLCELEDIDHTPGACRVCLVEILQAGKDTPQIVTACNTPVRDGMEV 94
Query: 346 KTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKR 525
+T S R + +E L+ +H DC C + G C+LQD + G ++RF D + R
Sbjct: 95 QTRSKKARDMQRLQVELLMADHLQDCATCIRHGSCELQDLAQFVGLQQNRFFDRERTEAR 154
Query: 526 AVEDKDVGPLIKTIMTRCIHCTRCI 600
V+ P + M RC+ C RC+
Sbjct: 155 PVDHS--SPSMVRDMRRCVRCQRCV 177
>UniRef50_Q5P4U4 Cluster: Formate dehydrogenase alpha
subunit,molybdenum or tungsten enzyme; n=2;
Betaproteobacteria|Rep: Formate dehydrogenase alpha
subunit,molybdenum or tungsten enzyme - Azoarcus sp.
(strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 950
Score = 88.6 bits (210), Expect = 1e-16
Identities = 50/169 (29%), Positives = 77/169 (45%)
Frame = +1
Query: 112 VQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEK 291
+ A V +D + + PG T+L AA + GV+IP CY + + GNCR C+VE++
Sbjct: 1 MNAPTNPVRFELDGREIDAQPGETILLAARRAGVDIPHLCYTDGMRADGNCRACVVEIDG 60
Query: 292 SPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSM 471
+C GM+VK S+ R ++ V+E L + P + D +
Sbjct: 61 ERVLAPSCCRAPKPGMKVKATSERARASQRLVLELLRADVP---------AAAEKPDSEL 111
Query: 472 AFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
A D+ TD F+ + + P I + CI CTRC+R EV
Sbjct: 112 AHWCDELGVTDSRFAPRAQPQPDRSHPGIAVDLAACIQCTRCVRACREV 160
>UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep:
Hydrogenase - Nyctotherus ovalis
Length = 1206
Score = 86.2 bits (204), Expect = 6e-16
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Frame = +1
Query: 73 RAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAV 252
+ APL R FA E + + ID + + V G + A + G +P CYH L
Sbjct: 8 KKAPLFLRTFATS-----EMISLKIDGKIISVPKGIMLADAIKKAGANVPTMCYHPDLPT 62
Query: 253 AGN-CRMCLVEVEKSPK-PVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCP 426
+G CR+CLVE KSP P+ +C PV +GM + T ++ R+ + +L HP C
Sbjct: 63 SGGICRVCLVESAKSPGYPIISCRTPVEEGMEIVTQGSKMKEYRQANLALMLSRHPNACL 122
Query: 427 ICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRF 606
C C Q+ S + F + + + + D+ I+ +CI+C C+
Sbjct: 123 SCTSNTNCKTQELSANMNIGQCGFANA--TPPKNDDSYDMTTAIERDNDKCINCDICVHT 180
Query: 607 AS 612
S
Sbjct: 181 CS 182
>UniRef50_Q73MB6 Cluster: Fe-hydrogenase; n=17; Bacteria|Rep:
Fe-hydrogenase - Treponema denticola
Length = 596
Score = 84.6 bits (200), Expect = 2e-15
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + ID+ + T+++AA G+ IP+ C+ + + CR+C+VE+E K + A
Sbjct: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C V +GM V TNS R R ++ +L H C IC + G C LQ +D +
Sbjct: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQ----TLANDLN 117
Query: 493 RFTDIHFSGKRAVEDKDVG-PLIKTIMTRCIHCTRCIRFASEV 618
D+ + + + D PLI+ +CI C RCI+ ++
Sbjct: 118 -IQDVLYEEQLEDQPWDKNFPLIRD-SKKCIKCMRCIQVCDKI 158
>UniRef50_Q2SQP6 Cluster: Probable hydrogen dehydrogenase; n=2;
Proteobacteria|Rep: Probable hydrogen dehydrogenase -
Hahella chejuensis (strain KCTC 2396)
Length = 252
Score = 84.6 bits (200), Expect = 2e-15
Identities = 51/161 (31%), Positives = 75/161 (46%)
Frame = +1
Query: 136 EVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAAC 315
E +D + V PG T++ A GV IPR C E L G+CR+C V+V + + AAC
Sbjct: 6 EFTVDGETVVAQPGQTIMDACDDAGVYIPRLCDVEGLVPQGSCRVCTVKV--NGRTAAAC 63
Query: 316 AMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSR 495
P G+ V+ ++ + R ++ L CPIC+ G C+LQ + G +
Sbjct: 64 TQPAEPGVAVENDTPQVQGYRRDLVRMLFHEGNHLCPICEASGRCELQAMAYRLGISQDS 123
Query: 496 FTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ R V+ P I RCI C RCIR + +V
Sbjct: 124 LYP-YLQPVRPVDASH--PDIALDTNRCILCGRCIRASRDV 161
>UniRef50_A7GW64 Cluster: Elongation factor Tu; n=3;
Campylobacter|Rep: Elongation factor Tu - Campylobacter
curvus 525.92
Length = 779
Score = 83.8 bits (198), Expect = 3e-15
Identities = 53/154 (34%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
I+ Q G +L A + G+ IP CY + CR+C+VE + K V +C
Sbjct: 5 INGQICEASEGEYILNVARREGIFIPALCYLSGCSPTLACRLCMVEADG--KRVYSCNAK 62
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQD--QSMAFGSDKSRF 498
+GM V TN+ RE +M+ VNHPL C +CD+ GEC+LQ+ M S K
Sbjct: 63 AKEGMNVITNTAEIDAEREAIMQTYCVNHPLQCGVCDKSGECELQNFAARMRVNSQKFAI 122
Query: 499 TDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCI 600
D H K+ LI CI C RCI
Sbjct: 123 KDSHKPHKK-------WGLINYDPALCIVCERCI 149
>UniRef50_Q603S5 Cluster: NAD-reducing hydrogenase, gamma subunit;
n=15; Proteobacteria|Rep: NAD-reducing hydrogenase,
gamma subunit - Methylococcus capsulatus
Length = 243
Score = 83.4 bits (197), Expect = 4e-15
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
ID +PV G T+++AA GV IP C++ G+C++C V+V + + +AC P
Sbjct: 8 IDGKPVTFTEGQTIMEAATAAGVYIPHLCHNPEFEPHGSCKLCTVKV--NGRNCSACTFP 65
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTD 504
G V ++ + R + + L V CP C++ G C LQ + G TD
Sbjct: 66 AADGQEVLNDTAELNELRRTITQMLFVEGNHLCPSCEKSGNCQLQAAAYFLG-----MTD 120
Query: 505 IHFSGKRAVEDKDVG-PLIKTIMTRCIHCTRCIRFASEV 618
HF + D P I RCI C C+R + +V
Sbjct: 121 AHFPFFYPRRELDASHPDILLDRDRCIFCALCVRASRDV 159
>UniRef50_Q3ZXP6 Cluster: Hydrogenase subunit HymC; n=9;
Bacteria|Rep: Hydrogenase subunit HymC - Dehalococcoides
sp. (strain CBDB1)
Length = 197
Score = 83.4 bits (197), Expect = 4e-15
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEV--EKSPK 300
E++++ ID + V G TV QAA G+ IP C+HE+L G CR+C VEV K
Sbjct: 2 EEIKLTIDGREVIAKSGQTVFQAATAAGIHIPSLCFHEQLEPYGGCRICSVEVVAGSRSK 61
Query: 301 PVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 480
VA+C PV G+ V T++D R R+ ++E LL P PI D E +G
Sbjct: 62 VVASCVYPVANGLVVNTSTDKIRHIRKVLIELLLTKAPASKPIRDLAEE---------YG 112
Query: 481 SDKSRFT 501
+D +RF+
Sbjct: 113 ADTARFS 119
>UniRef50_A4XH60 Cluster: Molybdopterin oxidoreductase; n=2;
Syntrophomonadaceae|Rep: Molybdopterin oxidoreductase -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 1178
Score = 82.6 bits (195), Expect = 7e-15
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V V ID++ + G T+L+ A + +EIP CY +RL G C +C+VE+E SPK A
Sbjct: 4 VRVNIDNKEIFAEEGKTILEVAHENNIEIPHLCYDKRLKPYGACGLCVVEIEGSPKLARA 63
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC-PIC 432
C+ V M +KT+S R AR+ +E LL H DC P C
Sbjct: 64 CSTYVTDKMVIKTDSPRVRNARKMALELLLSEHRGDCRPPC 104
>UniRef50_P22318 Cluster: NAD-reducing hydrogenase hoxS subunit
gamma; n=5; Bacteria|Rep: NAD-reducing hydrogenase hoxS
subunit gamma - Ralstonia eutropha (strain ATCC 17699 /
H16 / DSM 428 / Stanier 337)(Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier337))
Length = 234
Score = 82.6 bits (195), Expect = 7e-15
Identities = 51/163 (31%), Positives = 76/163 (46%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+++ ID + + G T++ AA+ GV IP CY + G CR+C V+V + AA
Sbjct: 3 IQITIDGKTLTTEEGRTLVDVAAENGVYIPTLCYLKDKPCLGTCRVCSVKVNGNV--AAA 60
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C + V KG+ V+ N R+ ++EFL +CP C++ G C LQ S
Sbjct: 61 CTVRVSKGLNVEVNDPELVDMRKALVEFLFAEGNHNCPSCEKSGRCQLQAVGYEVDMMVS 120
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
RF + R V+ I RCI C RC+ F + A
Sbjct: 121 RFP--YRFPVRVVD--HASEKIWLERDRCIFCQRCVEFIRDKA 159
>UniRef50_O25856 Cluster: NADH-ubiquinone oxidoreductase, NQO3
subunit; n=5; Helicobacteraceae|Rep: NADH-ubiquinone
oxidoreductase, NQO3 subunit - Helicobacter pylori
(Campylobacter pylori)
Length = 844
Score = 81.0 bits (191), Expect = 2e-14
Identities = 38/112 (33%), Positives = 60/112 (53%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
I+ + + G +VL+AA G+ IP CY + C+MC+VE++ K V +C
Sbjct: 6 INGKTIECQEGQSVLEAARSAGIYIPTICYLSGCSPTVACKMCMVEMDG--KRVYSCNTK 63
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 480
+ TN+ R+ +M+ VNHPL+C +CD+ GEC+LQD + G
Sbjct: 64 AKNNATILTNTPTLMDERKSIMQTYDVNHPLECGVCDKSGECELQDMTHLTG 115
>UniRef50_A2FCW4 Cluster: 64kDa iron hydrogenase, putative; n=6;
Trichomonas|Rep: 64kDa iron hydrogenase, putative -
Trichomonas vaginalis G3
Length = 591
Score = 81.0 bits (191), Expect = 2e-14
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 1/164 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVE-KSPKPVA 309
+ V ++ +P+ G TVL+ + + IPR C+H L +CR+CLVE + K P
Sbjct: 17 ITVTVNGKPLEAKKGETVLELCDRNNIRIPRLCFHPNLPPKASCRVCLVECDGKWLSP-- 74
Query: 310 ACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDK 489
AC V G+++ T S R + E ++ LL H C C C +D ++A+ S K
Sbjct: 75 ACVTTVWDGLKIDTKSKNVRDSVENNLKELLDCHDETCSACIANHRCQFRDMNVAY-SVK 133
Query: 490 SRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
+ +I + +++ I+ ++C+ C RCIR EVA
Sbjct: 134 AETKEI--CSEEGIDEST--NAIRLDTSKCVLCGRCIRACEEVA 173
>UniRef50_Q4FMU1 Cluster: Formate dehydrogenase Alpha subunit; n=2;
Candidatus Pelagibacter ubique|Rep: Formate
dehydrogenase Alpha subunit - Pelagibacter ubique
Length = 922
Score = 80.6 bits (190), Expect = 3e-14
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Frame = +1
Query: 142 FIDDQPVHVVPG-TTVLQ-AAAQVGVE-IPRFCYHERLAVAGNCRMCLVEV----EKSPK 300
+ID +P + P T+VL + +G + +P C LA G CR+C VEV + K
Sbjct: 10 YIDGKPYEIGPNHTSVLNFVKSYLGEKKVPTLCDDPNLAPYGACRVCSVEVALVKDGPTK 69
Query: 301 PVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 480
VA+C PV + + TN++ R+ ++E +L +HP++C C+ C+LQD + G
Sbjct: 70 VVASCHTPVGENQYIFTNNENLTALRKNIVELVLTDHPMECGTCEVNNNCELQDVANDLG 129
Query: 481 SDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
R+ + + ++ + CI+C RC+R E+
Sbjct: 130 ISDHRYNTP--KQHKGIPRDTSHDYMRMNLDNCINCGRCVRACDEI 173
>UniRef50_Q2W1S7 Cluster: NAD-reducing hydrogenase diaphorase moiety
small subunit; n=4; Proteobacteria|Rep: NAD-reducing
hydrogenase diaphorase moiety small subunit -
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Length = 256
Score = 80.2 bits (189), Expect = 4e-14
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Frame = +1
Query: 142 FIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVE----------- 288
F+D++ + G T++QAA G IP CYH G+C++C V ++
Sbjct: 8 FLDEEEIPFEEGQTIIQAALTAGKYIPHLCYHPEFKPHGSCKLCTVRIDSRTVTTEDGQS 67
Query: 289 -KSP-KPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQD 462
K P + A+C P G V++ R +++ LLV CP C++ G+C LQ
Sbjct: 68 VKIPGRAAASCTTPAQAGQHVESEVPEILDLRRTLVQMLLVEGNHYCPSCEKSGKCLLQG 127
Query: 463 QSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ G F +FS KR V+ P I + RCI C C+R ++EV
Sbjct: 128 LAYDLGVMDPHFPQ-YFS-KREVDASH--PDILLDLNRCILCELCVRASAEV 175
>UniRef50_Q4AMU3 Cluster: Ferredoxin:FAD-dependent pyridine
nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin,
iron-sulfur binding:Molybdopterin oxidoreductase Fe4S4
region; n=1; Chlorobium phaeobacteroides BS1|Rep:
Ferredoxin:FAD-dependent pyridine nucleotide-disulphide
oxidoreductase:4Fe-4S ferredoxin, iron-sulfur
binding:Molybdopterin oxidoreductase Fe4S4 region -
Chlorobium phaeobacteroides BS1
Length = 996
Score = 79.8 bits (188), Expect = 5e-14
Identities = 39/99 (39%), Positives = 59/99 (59%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
+ V VF+++ V G T+ + AA GV IP FCY +RL +C +C+VEVEK+ +
Sbjct: 3 DTVTVFLNNVSVQAPAGATIREVAAANGVHIPTFCYDDRLQPYASCFLCVVEVEKARGLL 62
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC 423
AC+ V +GM + T+S+ AR+ +E LL +H DC
Sbjct: 63 PACSTVVAEGMVIHTDSEKVITARKTALELLLSDHAGDC 101
Score = 41.5 bits (93), Expect = 0.016
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 430 CDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFA 609
C+ +CDL+ + +G+D +RF KR ++ + PLI+ +CI C C+R
Sbjct: 580 CNARFDCDLRTYATEYGADDARFR----GDKRKYDNDERHPLIRIEGDKCITCGSCVRIC 635
Query: 610 SEV 618
+EV
Sbjct: 636 TEV 638
>UniRef50_Q5V639 Cluster: Formate dehydrogenase alpha subunit; n=4;
Halobacteriaceae|Rep: Formate dehydrogenase alpha
subunit - Haloarcula marismortui (Halobacterium
marismortui)
Length = 1103
Score = 78.6 bits (185), Expect = 1e-13
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHER-------LAVAGNCRMCLVEVEKSPKP 303
+DD V V PG ++ A ++P CY++R + CR C+VE E+
Sbjct: 68 LDDDIVSVDPGAEGVEDDA----DVPALCYYDRDGDCSDEVGPRSECRTCMVETEEHGL- 122
Query: 304 VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGS 483
V +C+ P G+ V T++ +AR ++ +L NH L C C+ G C+LQD +++ G
Sbjct: 123 VPSCSFPAEDGLSVSTDTPDAEEARSVNLDLVLSNHNLRCTTCNGNGRCELQDAAISEGV 182
Query: 484 DKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
D R+ + D D I+ +CI C RC+ ++V
Sbjct: 183 DHPRYGVFDERDQYEPID-DTSSFIQIDRNKCILCNRCVDACNDV 226
>UniRef50_A1HDX4 Cluster: NAD-dependent formate dehydrogenase, alpha
subunit, selenocysteine- containing; n=4; Ralstonia
pickettii|Rep: NAD-dependent formate dehydrogenase,
alpha subunit, selenocysteine- containing - Ralstonia
pickettii 12J
Length = 886
Score = 77.0 bits (181), Expect = 3e-13
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 1/163 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V + ID P+ V G ++ A + G +P C+ +RL +G CR+CLV VE +PVA+
Sbjct: 2 VRLTIDGSPLEVAEGALLIDALSTAGKAVPHVCHDKRLTPSGACRLCLVLVEGQRRPVAS 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG-SDK 489
C V +GM V+T S +E + +P D + +G
Sbjct: 62 CTAEVAEGMVVQTRSHALDTLCRTNLELIAARYPRTAYAADP--KHPFHRLLAEYGVPPG 119
Query: 490 SRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ D F+ D P + M RC+HC RC+R EV
Sbjct: 120 GKHEDGFFT-------DDSHPYLGVGMERCVHCDRCVRICEEV 155
>UniRef50_Q1EYP6 Cluster: Ferredoxin:FAD-dependent pyridine
nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin,
iron-sulfur binding:Molybdopterin
oxidoreductase:Molybdopterin oxidoreductase Fe4S4
region; n=2; Clostridiaceae|Rep:
Ferredoxin:FAD-dependent pyridine nucleotide-disulphide
oxidoreductase:4Fe-4S ferredoxin, iron-sulfur
binding:Molybdopterin oxidoreductase:Molybdopterin
oxidoreductase Fe4S4 region - Clostridium oremlandii
OhILAs
Length = 1192
Score = 75.4 bits (177), Expect = 1e-12
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +1
Query: 175 GTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTN 354
G T+L+ A +EIP CY E++ V G+C +C+VEVE PK + ACA + M ++TN
Sbjct: 18 GQTILEVAKANDIEIPTLCYDEKVKVYGSCGLCVVEVEGIPKLLKACATEISDHMIIRTN 77
Query: 355 SDLTRKAREGVMEFLLVNHPLDC-PIC 432
+ +++R+ +E LL +H DC P C
Sbjct: 78 TTRVKESRKIALELLLSDHVGDCRPPC 104
>UniRef50_Q4JBU3 Cluster: Formate dehydrogenase alpha chain; n=2;
Archaea|Rep: Formate dehydrogenase alpha chain -
Sulfolobus acidocaldarius
Length = 976
Score = 74.9 bits (176), Expect = 1e-12
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 1/164 (0%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V V +D + V + ++ A + G +P CY+ L +C C+VEV + K V +
Sbjct: 4 VRVKVDGKEVELNTELSLALALMEKGFYVPHVCYNTGLTPIQSCDTCIVEV--NGKLVRS 61
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICD-QGGECDLQDQSMAFGSDK 489
CA+ ++GM + NS AR+ + +L H L C IC+ G+C+L + + +
Sbjct: 62 CAIKAVEGMSINVNSPRALNARKTAVSRILRYHKLYCTICENNNGDCELHEAVIKLNINS 121
Query: 490 SRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
++ D + A++ D GP ++CI C RC+ + A
Sbjct: 122 QKYVDKGY----ALD--DTGPFYTYDPSQCILCGRCVEACQDFA 159
>UniRef50_A0B7M9 Cluster: Formate dehydrogenase, alpha subunit; n=1;
Methanosaeta thermophila PT|Rep: Formate dehydrogenase,
alpha subunit - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 920
Score = 74.1 bits (174), Expect = 2e-12
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
+K+ + ID V V GTT+L AA + G+ IP C H L G C++C+VE+
Sbjct: 2 DKICLTIDGVEVSVPRGTTILNAARKAGIYIPALCDHPDLKPIGICKLCIVEIAGWETYP 61
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLL--VNHPLDCPICDQGGEC 450
+C GM V+T++ ++ R +E LL +HP+ C IC++ +C
Sbjct: 62 TSCTTYAENGMVVRTDTSEIQEMRRNTLELLLAITSHPVSCLICERKRDC 111
>UniRef50_Q2FEI5 Cluster: Putative formate dehydrogenase
SAUSA300_2258; n=77; cellular organisms|Rep: Putative
formate dehydrogenase SAUSA300_2258 - Staphylococcus
aureus (strain USA300)
Length = 984
Score = 74.1 bits (174), Expect = 2e-12
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPV 306
E + V +D + V PGT +L+ +P CY+E + C C VE++ K
Sbjct: 3 EHLVVTLDGKDYLVEPGTNLLEFIKSQDTFVPSICYNESMGPIQTCDTCTVEID--GKIE 60
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICD-QGGECDLQDQSMAFGS 483
+C+ + + M V T ++ + A++ ++ +L H L C +CD G+C++ + A+G
Sbjct: 61 RSCSTVIDRPMTVNTVNNDVKDAQKEALDRILEKHMLYCTVCDYNNGDCEIHNTMDAWGL 120
Query: 484 DKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ K +KD GP + +CI C RC+ ++
Sbjct: 121 QHQT-----YEYKEKPYEKDYGPFYRYDPNQCILCGRCVEACQDI 160
>UniRef50_O27595 Cluster: Formate dehydrogenase, alpha subunit
homolog; n=4; cellular organisms|Rep: Formate
dehydrogenase, alpha subunit homolog - Methanobacterium
thermoautotrophicum
Length = 865
Score = 73.7 bits (173), Expect = 3e-12
Identities = 42/141 (29%), Positives = 61/141 (43%)
Frame = +1
Query: 181 TVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSD 360
TVL+AA + IP C+ E + G CR+CLVE + V AC PV G + S+
Sbjct: 2 TVLEAALANDIYIPHLCFREGIEPFGGCRLCLVE-NTDGRLVTACETPVEDGAEFISESE 60
Query: 361 LTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDK 540
R V+ L+ H DC C G+C LQ+ S + + + + D+
Sbjct: 61 RINNIRRTVVSLLISEHSRDCLSCPSSGDCSLQEVSSYLNLTEDDLSRLRQDLPESEPDE 120
Query: 541 DVGPLIKTIMTRCIHCTRCIR 603
P +CI C C+R
Sbjct: 121 S-NPFFIRNHDKCILCGLCVR 140
>UniRef50_Q2WB01 Cluster: FdhA-II protein; n=4;
Alphaproteobacteria|Rep: FdhA-II protein -
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Length = 891
Score = 72.1 bits (169), Expect = 1e-11
Identities = 49/160 (30%), Positives = 68/160 (42%), Gaps = 2/160 (1%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHER--LAVAGNCRMCLVEVEKSPKPVAACA 318
+D Q V G T+ Q + ++G IP C+ +R GNCR C+VE++ A+C
Sbjct: 6 LDGQEVEAAEGETIWQVSKRLGTTIPHLCHTDRPGFEPEGNCRACVVEIKGERALAASCR 65
Query: 319 MPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRF 498
GM V+ + T KAR V E LL +H P + + A G SRF
Sbjct: 66 RRPTPGMVVEAANGRTAKARRMVFELLLADHASPDP------DSAFLGWAGALGVTASRF 119
Query: 499 TDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
V P + + CIHCT C+R EV
Sbjct: 120 A----PSAAPVRPDTSHPAMAVRLDACIHCTLCLRACREV 155
>UniRef50_Q0AWA6 Cluster: 2Fe-2S iron-sulfur cluster domain with
dehydrogenase; n=1; Syntrophomonas wolfei subsp. wolfei
str. Goettingen|Rep: 2Fe-2S iron-sulfur cluster domain
with dehydrogenase - Syntrophomonas wolfei subsp. wolfei
(strain Goettingen)
Length = 247
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKP--V 306
+E+ ID + PG ++L A + G+ IP CYHE G+CR+C VEV + V
Sbjct: 1 MELIIDGKTCKANPGDSILNVARREGIAIPTLCYHEAFGGQGSCRLCTVEVTAGGRSRLV 60
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFL 399
A+C PV +G+ VKT++ K R ++ L
Sbjct: 61 ASCTYPVSEGIEVKTSTPAVEKIRRNIIMML 91
>UniRef50_A7H5S5 Cluster: NADH-quinone oxidoreductase, G subunit;
n=11; Campylobacter|Rep: NADH-quinone oxidoreductase, G
subunit - Campylobacter jejuni subsp. doylei 269.97
Length = 820
Score = 70.5 bits (165), Expect = 3e-11
Identities = 44/142 (30%), Positives = 67/142 (47%)
Frame = +1
Query: 175 GTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTN 354
G +L A + + IP CY + CRMC+VE + K V +C +GM V+++
Sbjct: 15 GEYILNIARRNDIFIPAICYLSGCSPTLACRMCMVEADG--KKVYSCNTKAKEGMVVESD 72
Query: 355 SDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVE 534
R +M+ +NHPL+C +CD+ GEC+LQ+ + KSR + K +
Sbjct: 73 LQNLWDERNEIMQAYCINHPLECGVCDKSGECELQN-----FTHKSRVNVQKYWIKDTHK 127
Query: 535 DKDVGPLIKTIMTRCIHCTRCI 600
+I CI C RCI
Sbjct: 128 PHKHWGMINYDPALCIVCERCI 149
>UniRef50_Q82M24 Cluster: Putative NADH dehydrogenase I chain G;
n=2; Streptomyces|Rep: Putative NADH dehydrogenase I
chain G - Streptomyces avermitilis
Length = 286
Score = 69.3 bits (162), Expect = 7e-11
Identities = 45/156 (28%), Positives = 70/156 (44%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
VE +D Q V G+T+L A G ++P C + L CR+C+VEVE + V A
Sbjct: 13 VEFTVDGQEARVPEGSTILDACRAAGKDVPTLCQGDTLTPKNACRVCVVEVEGARTLVPA 72
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C+ GM V+T+++ R +R V+E L + L G + + + FG D +
Sbjct: 73 CSRGAEPGMEVRTDTERARHSRRLVLELLASSVDLSTTPKAAGWIKEYEAKPDRFGPDAA 132
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCI 600
R + E K L +CI C +C+
Sbjct: 133 RLNE---------EPKVDNDLYVRDYDKCILCYKCV 159
>UniRef50_A1WBF9 Cluster: Formate dehydrogenase, alpha subunit;
n=34; Proteobacteria|Rep: Formate dehydrogenase, alpha
subunit - Acidovorax sp. (strain JS42)
Length = 963
Score = 68.9 bits (161), Expect = 9e-11
Identities = 33/90 (36%), Positives = 50/90 (55%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
+D + + +PG T+ QAA + GV+IP C+ + L GNCR C+VE+E +C
Sbjct: 16 LDGELLQALPGETLWQAARRYGVQIPHLCHTDGLRPDGNCRACVVEIEGERTLAPSCCRA 75
Query: 325 VMKGMRVKTNSDLTRKAREGVMEFLLVNHP 414
GMRV S K+++ V+E LL + P
Sbjct: 76 PTPGMRVHAQSPRALKSQQMVLELLLSDMP 105
>UniRef50_Q2LYA8 Cluster: 2Fe-2S iron-sulfur cluster domain with
dehydrogenase; n=1; Syntrophus aciditrophicus SB|Rep:
2Fe-2S iron-sulfur cluster domain with dehydrogenase -
Syntrophus aciditrophicus (strain SB)
Length = 240
Score = 68.1 bits (159), Expect = 2e-10
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKP--V 306
V + ID + + GTT+L AA G+ IP C+HE + +G CR+C+VE+ K + V
Sbjct: 2 VNLVIDGKKIEAETGTTILSAARDNGIVIPTLCHHESIEASGACRLCVVEIAKGGRKRIV 61
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 486
+C V G+ V T S+ R V+E L+ P + + E ++ Q F D
Sbjct: 62 TSCIYLVEDGIVVDTKSERVLGVRRLVLELLMARCPESEVVRNLAEELGVKTQK-RFKPD 120
Query: 487 KSR 495
K +
Sbjct: 121 KDK 123
>UniRef50_Q1NVC6 Cluster: Ferredoxin:FAD-dependent pyridine
nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin,
iron-sulfur binding:FAD dependent
oxidoreductase:Molybdopterin oxidoreductase Fe4S4
region; n=3; delta proteobacterium MLMS-1|Rep:
Ferredoxin:FAD-dependent pyridine nucleotide-disulphide
oxidoreductase:4Fe-4S ferredoxin, iron-sulfur
binding:FAD dependent oxidoreductase:Molybdopterin
oxidoreductase Fe4S4 region - delta proteobacterium
MLMS-1
Length = 826
Score = 68.1 bits (159), Expect = 2e-10
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +1
Query: 145 IDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
I+DQ V+ G T+L+AA++ G+ IP C + C +CLVEVE PV ACA P
Sbjct: 8 INDQSVNASAGMTILEAASRAGIRIPTLCQVDGKNSEVPCELCLVEVEGQTAPVKACATP 67
Query: 325 VMKGMRVKT-NSDLTRKAREGVMEFLLVNHPLDC 423
V G++V T N +L RE + L H DC
Sbjct: 68 VADGLKVITENKELVEHRRER-LAVLAETHFGDC 100
>UniRef50_A0K165 Cluster: Formate dehydrogenase, alpha subunit; n=2;
Actinomycetales|Rep: Formate dehydrogenase, alpha
subunit - Arthrobacter sp. (strain FB24)
Length = 888
Score = 68.1 bits (159), Expect = 2e-10
Identities = 43/162 (26%), Positives = 75/162 (46%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+++ +D + V V PG T+L A G+ +P C+ +RL A +CR CLV+V AA
Sbjct: 1 MKLLVDGRQVDVPPGATLLDAVRAAGLALPTLCHDDRLTTAASCRTCLVDV-TGRGVAAA 59
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKS 492
C+ P +G+R+ + +R R + ++ P + +L Q + +G +
Sbjct: 60 CSTPAEEGLRIAV--EASRPVRRDALAAIVAGLPARA-LEVPADRSELVRQCVEYGV-VA 115
Query: 493 RFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ F + A P +K CI C RC+R +E+
Sbjct: 116 PAGSVEFPARGADHSH---PYVKLDRDLCIACGRCVRACAEI 154
>UniRef50_Q1PW50 Cluster: Similar to NAD(P) oxidoreductase,
FAD-containing subunit; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to NAD(P) oxidoreductase,
FAD-containing subunit - Candidatus Kuenenia
stuttgartiensis
Length = 693
Score = 66.1 bits (154), Expect = 6e-10
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Frame = +1
Query: 130 KVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPK--P 303
KV V ID + G T+ AA +GVEIP C++++++ G+C +C VE +KS +
Sbjct: 4 KVNVTIDGKDYQFDTGMTIYDAAKSLGVEIPTLCHNDKISHYGSCWVCTVE-QKSGRGGM 62
Query: 304 VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC-PICDQGG 444
V +C+ + GM V+ ++ R +R+ ++ LL +H DC C+Q G
Sbjct: 63 VPSCSTKLENGMVVELENEKVRASRKAALDLLLSDHFGDCYAPCNQKG 110
>UniRef50_Q18XD7 Cluster: Hydrogenase large subunit-like; n=4;
Clostridiales|Rep: Hydrogenase large subunit-like -
Desulfitobacterium hafniense (strain DCB-2)
Length = 1150
Score = 65.3 bits (152), Expect = 1e-09
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Frame = +1
Query: 127 EKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVA-GNCRMCLVEVEKSPKP 303
+++ V ++ + + V T+LQA Q + IP CY RL + GNC +C+VE+ + +
Sbjct: 8 QRIRVTVNGRQMEVYGDLTILQALLQEDIHIPHLCYDIRLERSNGNCGLCVVELGEGSEQ 67
Query: 304 --VAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC 423
V AC P+ +GM + TNS R+ +E +L +H DC
Sbjct: 68 QDVKACHTPIQEGMIIHTNSPRLEHYRKIRLEQILADHNADC 109
>UniRef50_Q3A637 Cluster: Putative formate dehydrogenase; n=1;
Pelobacter carbinolicus DSM 2380|Rep: Putative formate
dehydrogenase - Pelobacter carbinolicus (strain DSM 2380
/ Gra Bd 1)
Length = 307
Score = 64.5 bits (150), Expect = 2e-09
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = +1
Query: 34 QPLSRALALTSPVRAAPLTARRFAD-QVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVG 210
+P S L L A F D + + +PE V + I+ +P+ + ++ + G
Sbjct: 142 EPKSEGYRLNEVAEKLNLCAGFFDDDEDKNEPEWVNLTINGEPIKAIKNQNLMTVCKENG 201
Query: 211 VEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVM 390
+++P C HE L G+CR+CLV+++ A+C + V GM + T+ + R+ ++
Sbjct: 202 IDVPHLCCHEDLDKYGSCRLCLVKIDGFRDMPASCCVEVTDGMNIVTSDEELEHCRKIML 261
Query: 391 EFLL 402
E +
Sbjct: 262 ELAI 265
>UniRef50_Q3Z8I1 Cluster: [Fe] hydrogenase, HymC subunit, putative;
n=2; Dehalococcoides|Rep: [Fe] hydrogenase, HymC
subunit, putative - Dehalococcoides ethenogenes (strain
195)
Length = 222
Score = 64.1 bits (149), Expect = 3e-09
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKS--PKPV 306
+ + ID + G T+L+ A + G+ IP C E ++ G CR+C+VE+E+ K V
Sbjct: 2 INLTIDGKKYQAEEGQTILEVANRHGIFIPTLCVDEAVSAYGACRLCMVEIERKGRKKLV 61
Query: 307 AACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHP 414
A+C V +G+ V T ++ R+ V+E LL P
Sbjct: 62 ASCLYEVEEGLAVSTQNERIANIRKTVIELLLARCP 97
>UniRef50_Q68VL2 Cluster: BzdV; n=3; Azoarcus|Rep: BzdV - Azoarcus
sp. CIB
Length = 849
Score = 60.9 bits (141), Expect = 2e-08
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYH-------ERLAVAGNCRMCLVEVEK 291
V++ ID V G +VL AA G+ IP C H +R A G C +C+VE+E
Sbjct: 27 VKLSIDGVEVEAPAGASVLNAATAAGLYIPALCAHPDLPPAGQRGAGEGGCNLCMVEIEG 86
Query: 292 SPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGEC 450
+ AC+ V GM V T S + R+ + +L HP C C Q C
Sbjct: 87 TDGLSKACSTTVTAGMVVTTQSAAIQTVRQANLAKVLGPHPHVCLTCPQRDGC 139
>UniRef50_Q565Z3 Cluster: Putative dehydrogenase; n=1; uncultured
bacterium|Rep: Putative dehydrogenase - uncultured
bacterium
Length = 846
Score = 60.5 bits (140), Expect = 3e-08
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Frame = +1
Query: 262 CRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQG 441
C +C+VEV P+PV AC PV GM ++T S+ ++ R + +L HP C C Q
Sbjct: 99 CGLCVVEVAGLPEPVRACQTPVTAGMSIQTESEALKELRRTNLMQILARHPHACLTCAQR 158
Query: 442 GECDLQDQSMAFGSDKSRFTDIHFSGKRAVED-----------KDVG-------PLIKTI 567
C L+D S ++ H R V + + G PL
Sbjct: 159 EGCSLEDCSTNVPKEERCCPKFHNCELRKVAEYVGVKEQTPRYRPAGLPVLNEEPLFARD 218
Query: 568 MTRCIHCTRCIRFASEV 618
CI C RC+R ++V
Sbjct: 219 FNLCIDCARCVRVCNQV 235
>UniRef50_Q4UWQ3 Cluster: Formate dehydrogenase related protein;
n=3; Gammaproteobacteria|Rep: Formate dehydrogenase
related protein - Xanthomonas campestris pv. campestris
(strain 8004)
Length = 990
Score = 59.3 bits (137), Expect = 7e-08
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 1/161 (0%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACA 318
V D + +H +++ + G+++ CYH L C +C VEV + V C
Sbjct: 9 VVYDGKTLHGQADIPLIEFLSGHGIDLSHICYHPALGAPQTCDVCWVEV--GGELVRGCT 66
Query: 319 MPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQG-GECDLQDQSMAFGSDKSR 495
+ G+ V + + AR M+ +L H L C +C+ G+C L + F K
Sbjct: 67 LRSHDGLEVSSTVERAHAARHEGMDRVLAKHELYCTLCEHNTGDCTLHN---TFADMKMP 123
Query: 496 FTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
F K +D P +CI C RC+ +V
Sbjct: 124 IQRYAFQRKPYEKDHS-NPFYTYDPDQCILCGRCVEACQKV 163
>UniRef50_A6PMG6 Cluster: Ferredoxin; n=1; Victivallis vadensis ATCC
BAA-548|Rep: Ferredoxin - Victivallis vadensis ATCC
BAA-548
Length = 675
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/97 (26%), Positives = 50/97 (51%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+E +D + V PG T+L+ A G++IP C +R++ +C +C+V +K+ + + +
Sbjct: 3 IEFILDGRNVTAEPGQTILEVARANGIKIPTLCREQRISKTTSCFVCVVRDKKTGRFMPS 62
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC 423
CA G ++ ++ R+ + LL H DC
Sbjct: 63 CAAMPAPGQEIEASTPEVLDMRKTALNLLLSEHSGDC 99
>UniRef50_Q0HRS3 Cluster: Formate dehydrogenase, alpha subunit;
n=24; Gammaproteobacteria|Rep: Formate dehydrogenase,
alpha subunit - Shewanella sp. (strain MR-7)
Length = 1432
Score = 57.6 bits (133), Expect = 2e-07
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFC----YHERLAVAGN-----CRMCLVEV 285
+E+ ID+Q V P +L+AA++ G+ IP C +L A + C +CLV++
Sbjct: 2 IELRIDNQIVTAEPNDNLLRAASKAGIAIPSLCDPTDATRQLGAAPHADKQDCNLCLVQI 61
Query: 286 EK---SPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPI-CDQGGECD 453
E S + V AC P GM+V T S K R+ + +L +H DC C Q
Sbjct: 62 ENTDASLRCVKACETPAEAGMKVITQSAYLTKQRQAALSTILSDHFADCEAPCQQACPAG 121
Query: 454 LQDQSMAF 477
+ QS +
Sbjct: 122 VDVQSYLY 129
>UniRef50_Q5JIQ3 Cluster: Glutamate synthase beta chain-related
oxidoreductase, containing 2Fe- 2S and 4Fe-4S clusters;
n=1; Thermococcus kodakarensis KOD1|Rep: Glutamate
synthase beta chain-related oxidoreductase, containing
2Fe- 2S and 4Fe-4S clusters - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 952
Score = 55.6 bits (128), Expect = 9e-07
Identities = 27/97 (27%), Positives = 51/97 (52%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
V++ ++ + V G +++ ++ +P FCY E L G+CR+CLV + +
Sbjct: 3 VKIILNGKETEVPDGKPLIEFLREI-THVPGFCYTEELDPYGSCRLCLVSTPRG--VTTS 59
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC 423
C + M+G+ V+T +D R+ +E +L +H DC
Sbjct: 60 CTLKPMEGLSVETLTDEVVSMRKTALELILSDHYGDC 96
>UniRef50_A1I854 Cluster: Molybdopterin oxidoreductase Fe4s4 region;
n=1; Candidatus Desulfococcus oleovorans Hxd3|Rep:
Molybdopterin oxidoreductase Fe4s4 region - Candidatus
Desulfococcus oleovorans Hxd3
Length = 376
Score = 54.0 bits (124), Expect = 3e-06
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Frame = +1
Query: 139 VFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACA 318
+ I+ + G T+L A + G++IP C+ + G CR+C+VEV + V AC
Sbjct: 5 IVINGHELSFKDGETILDVALRNGIDIPTLCHLKGTTPTGTCRVCVVEVHGADDLVTACT 64
Query: 319 MPVMKGMRVKTNS-DLTRKAREGVMEFLLV-NH--PLDCPIC-DQGG-----ECDLQDQS 468
M V+T S + RE + E L NH + C D G + D Q ++
Sbjct: 65 EEAAHNMVVRTESARVVASRRETIREMLASGNHNCAMSGTACKDWTGFQMAVQADDQAEA 124
Query: 469 MAFGSDKSRFTDIHF----SGKRAVED------KDVGPLIKTIMTRCIHCTRCIRFASEV 618
+ R D+ + +G D + P I +RCI C RC++ +EV
Sbjct: 125 LCPAWGDCRLQDLAYRYQVTGDVPAGDDVSYPMEMANPFIIRDFSRCIRCGRCVKACNEV 184
>UniRef50_A2DJB5 Cluster: Iron only hydrogenase large subunit,
C-terminal domain containing protein; n=2; Trichomonas
vaginalis G3|Rep: Iron only hydrogenase large subunit,
C-terminal domain containing protein - Trichomonas
vaginalis G3
Length = 1103
Score = 53.6 bits (123), Expect = 4e-06
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 175 GTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTN 354
G+TV+ AA +G+ IP+ C H + G CR+C+V+ + AC+ ++ M + TN
Sbjct: 16 GSTVMDAAESLGIYIPKLCAHPDIPPQGKCRLCVVKTAGN-NYTLACSTKLVNNMEITTN 74
Query: 355 S-DLTRKAREGVMEF 396
+ D+ +KA + + +F
Sbjct: 75 TPDVKKKALDALSQF 89
>UniRef50_A3QB33 Cluster: Formate dehydrogenase, alpha subunit; n=8;
Gammaproteobacteria|Rep: Formate dehydrogenase, alpha
subunit - Shewanella loihica (strain BAA-1088 / PV-4)
Length = 1410
Score = 50.8 bits (116), Expect = 3e-05
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCY-----HERLAVAGNCRMCLVEV--EK 291
+E+ D Q V G +L A G+ IP C+ ++LA +C +C VEV EK
Sbjct: 2 IELTFDGQVVKANRGEDLLTCAKAAGIAIPNLCHLGKQLDDKLAGKQDCNLCYVEVRDEK 61
Query: 292 SP-KPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPI-CDQGGECDLQDQ 465
V AC V + V T+S K R+ ++ LL +H DC C Q + Q
Sbjct: 62 GDFHTVKACKTQVEAQLEVITHSAALSKRRQAALKHLLSDHFADCEAPCQQACPAGVDVQ 121
Query: 466 S 468
S
Sbjct: 122 S 122
>UniRef50_Q2FP96 Cluster: Ferredoxin; n=1; Methanospirillum hungatei
JF-1|Rep: Ferredoxin - Methanospirillum hungatei (strain
JF-1 / DSM 864)
Length = 270
Score = 49.6 bits (113), Expect = 6e-05
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Frame = +1
Query: 175 GTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKP--VAACAMPVMKGMRVK 348
G L A ++ ++IP CY + L G CR+C+V+V K AC + V G+ +
Sbjct: 25 GEIFLLTALRLNIDIPHLCYEKALEPYGACRLCMVDVVTCGKTTMTPACTIKVHNGLEIL 84
Query: 349 TNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRA 528
T++ K R + E L P I ++ + +G K+RF K+
Sbjct: 85 TDTPEIIKHRRLLFELYLAEAPKSEVI---------REMAAKYGVTKTRFL------KKI 129
Query: 529 VEDKDVGPLIKTIMTRCIHCTRCIRFASEV 618
V D PL +CI C C+R +E+
Sbjct: 130 VHD---DPL----FGKCILCGLCVRVCNEI 152
>UniRef50_P29166 Cluster: Iron hydrogenase 1; n=22; Clostridium|Rep:
Iron hydrogenase 1 - Clostridium pasteurianum
Length = 574
Score = 49.6 bits (113), Expect = 6e-05
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
Frame = +1
Query: 178 TTVLQAAAQVGVEIPRFCYHERLAVAGN-CRMCLVEVEKSPKPVAACAMPVMKGMRVKTN 354
TT+L+ A ++I C+ N C +C VEVE + V AC + GM + TN
Sbjct: 17 TTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGL-VTACDTLIEDGMIINTN 75
Query: 355 SDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVE 534
SD + + + LL H C C++ C+ + + + S+ F K E
Sbjct: 76 SDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASK----PFLPKDKTE 131
Query: 535 DKDVGPLIKTI-MTRCIHCTRCI 600
D T+ T+C+ C RC+
Sbjct: 132 YVDERSKSLTVDRTKCLLCGRCV 154
>UniRef50_A5N6F9 Cluster: NADH dehydrogenase-related protein; n=2;
Clostridiales|Rep: NADH dehydrogenase-related protein -
Clostridium kluyveri DSM 555
Length = 253
Score = 46.8 bits (106), Expect = 4e-04
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEV--EKSPKPV 306
+++ I+ + G T+L+ A + + IP C+ + L CR C+VEV + K
Sbjct: 1 MKIVINGENYETQKGDTILKVARRNNIYIPTLCHSDALPGLATCRFCIVEVIDGEESKVA 60
Query: 307 AACAMPVMKGMR---VKTNSDLTRKAREGVMEFLLVNHP 414
A+C P G R V T+SD ++ R+ + L P
Sbjct: 61 ASCISPANPGNREIEVITDSDKIKRMRKVIAMLLQARCP 99
>UniRef50_A2DRY8 Cluster: Iron only hydrogenase large subunit,
C-terminal domain containing protein; n=1; Trichomonas
vaginalis G3|Rep: Iron only hydrogenase large subunit,
C-terminal domain containing protein - Trichomonas
vaginalis G3
Length = 541
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + ID + G T+LQ + GV IP C H L +C +C+V++ + V +
Sbjct: 2 LSIKIDGKEYQEKKGQTILQVCNKHGVYIPTLCNHPDLPPIAHCGVCVVKINGN-NFVLS 60
Query: 313 CAMPVMKGMRVKTNS-DLTRKAREGVMEF 396
C+ + GM ++T + ++ KA + + F
Sbjct: 61 CSHKIAAGMEIETGTPEIKAKALDALQNF 89
>UniRef50_A2DJT6 Cluster: Iron only hydrogenase large subunit,
C-terminal domain containing protein; n=1; Trichomonas
vaginalis G3|Rep: Iron only hydrogenase large subunit,
C-terminal domain containing protein - Trichomonas
vaginalis G3
Length = 559
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ + I+ Q +V TT+++A Q+ + +P C H L G C + +V+V S A
Sbjct: 2 IHLTINGQDAYVRRNTTIIEACRQLNIYVPTLCSHPDLPPIGACGVDVVKVNGSSLQ-RA 60
Query: 313 CAMPVMKGMRVKTNS-DLTRKAREGVMEF 396
C +GM V+TN+ D+ +++ + +F
Sbjct: 61 CVTYCQEGMVVETNTMDVKQQSLLNLQKF 89
>UniRef50_A6D5X2 Cluster: Putative formate dehydrogenase,
alphasubunit; n=1; Vibrio shilonii AK1|Rep: Putative
formate dehydrogenase, alphasubunit - Vibrio shilonii
AK1
Length = 1371
Score = 42.3 bits (95), Expect = 0.009
Identities = 24/97 (24%), Positives = 41/97 (42%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAA 312
+ V I+ Q + ++L A + V++P C + +C +C+VEV V A
Sbjct: 1 MNVIINGQTYLLRENKSILDVAKDIQVDVPSLCSISKHDDKQSCDLCVVEV-VGKGIVKA 59
Query: 313 CAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDC 423
C + GM + T S R + + +H DC
Sbjct: 60 CETKIQDGMTIVTQSAQINNLRRQALNKIFADHNADC 96
>UniRef50_A0GGR6 Cluster: Putative uncharacterized protein; n=6;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia phytofirmans PsJN
Length = 128
Score = 40.7 bits (91), Expect = 0.027
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +1
Query: 91 ARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAA--QVGVEIPRFCYHER--LAVAG 258
A +F + + E + FID Q V + G T+L A Q V F R + G
Sbjct: 20 ASQFIRLAETRREPLHFFIDGQEVAALQGDTLLTAVLMQQRRVRESEFSGAPRAGFCLIG 79
Query: 259 NCRMCLVEVEKSPKPVAACAMPVMKGMRVKT 351
C+ C + E K V AC+ PV +GMRV T
Sbjct: 80 ACQDCWMRTEDG-KRVRACSTPVTEGMRVLT 109
>UniRef50_Q2BI72 Cluster: Putative uncharacterized protein; n=1;
Neptuniibacter caesariensis|Rep: Putative
uncharacterized protein - Neptuniibacter caesariensis
Length = 127
Score = 37.9 bits (84), Expect = 0.19
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Frame = +1
Query: 121 QPEK-VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRF---CYHERLA--VAGNCRMCLVE 282
+PE V++ I+DQ ++V G++V A A G R ER A G C CLVE
Sbjct: 8 RPEHTVQLHINDQEINVPAGSSVWAAMAVAGETTTRLSSVSEKERSAYCAMGVCFECLVE 67
Query: 283 VEKSPKPVAACAMPVMKGMRVKTNSDLTRKA 375
V+ P AC + +GM+VK ++T+++
Sbjct: 68 VDGVPNR-QACLIEAREGMQVK-RQEITQES 96
>UniRef50_A6GES6 Cluster: Ferredoxin / FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=1; Plesiocystis
pacifica SIR-1|Rep: Ferredoxin / FAD-dependent pyridine
nucleotide-disulphide oxidoreductase - Plesiocystis
pacifica SIR-1
Length = 315
Score = 36.7 bits (81), Expect = 0.45
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 250 VAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNS 357
+AG+C CLV V+ P V AC PV +GMRV + +
Sbjct: 56 LAGDCGTCLVRVDGRPN-VRACMTPVREGMRVSSQN 90
>UniRef50_A2E4U8 Cluster: Iron only hydrogenase large subunit,
C-terminal domain containing protein; n=1; Trichomonas
vaginalis G3|Rep: Iron only hydrogenase large subunit,
C-terminal domain containing protein - Trichomonas
vaginalis G3
Length = 615
Score = 36.3 bits (80), Expect = 0.59
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 136 EVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAAC 315
E+ ID + G T+ ++ +++PR C H C +C V V + AC
Sbjct: 16 EITIDGKKYEAFQGETIQNVCSRNHIQVPRAC-HSYYYKGDECGLCKVLVNGTSLQ-NAC 73
Query: 316 AMPVMKGMRVKTNS-DLTRKAREGVMEF 396
V KG+ VKT S ++ + E + +F
Sbjct: 74 KTLVYKGLDVKTRSPEVIKNFPEAMKKF 101
>UniRef50_Q92YC9 Cluster: Putative oxidoreductase; n=1;
Sinorhizobium meliloti|Rep: Putative oxidoreductase -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 354
Score = 34.3 bits (75), Expect = 2.4
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +1
Query: 43 SRALALTSPVRAAPLTARRFADQVQAQ-PEKV--EVFIDDQPVH--VVPGTTVLQAAAQV 207
+RA+A P+RA + F +++ + P+K+ EV+ H PG T+L+AA
Sbjct: 239 ARAMAAEVPIRA--VYEESFGERIPIEEPDKLGGEVYFSLSGKHGTCAPGETILEAALNS 296
Query: 208 GVEIPRFCYHERLAVAGNCRMCLVE 282
G+ I C+ V G+C++ L +
Sbjct: 297 GIWIESSCHQ---GVCGSCKVKLTQ 318
>UniRef50_Q21IR3 Cluster: CheW-like protein; n=1; Saccharophagus
degradans 2-40|Rep: CheW-like protein - Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Length = 385
Score = 34.3 bits (75), Expect = 2.4
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 10 DTQKKMLRQPLSRALALTSPVRAAPLTARRFADQV-QAQPEKVEVFIDDQPVHVVPGTTV 186
+TQK+ L+ L++ + L +PV+ P TA+ ++V Q +KV V +Q V V V
Sbjct: 131 ETQKQKLQALLNQGIQLQAPVKTKPQTAQVVIEKVAQKVEQKVRV---EQKVQVEQKIQV 187
Query: 187 LQAAAQVGVEI 219
Q +V VE+
Sbjct: 188 EQKVQEVHVEV 198
>UniRef50_Q987J5 Cluster: Mlr7027 protein; n=5; Proteobacteria|Rep:
Mlr7027 protein - Rhizobium loti (Mesorhizobium loti)
Length = 100
Score = 33.9 bits (74), Expect = 3.1
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = +1
Query: 85 LTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVG--VEIPRFCYHER--LAV 252
+TA R + V F D Q + G TVL A G + + F R +
Sbjct: 2 ITAGRIVRLAERDRAGVHFFFDGQIRRALEGDTVLTAMLASGHALRMSEFGPEPRAGFCL 61
Query: 253 AGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKT 351
G C+ C + E+ P+ + AC + +GMR++T
Sbjct: 62 MGACQDCWLWQEEGPR-LRACTTLIAEGMRLRT 93
>UniRef50_Q7NH04 Cluster: Gll2733 protein; n=1; Gloeobacter
violaceus|Rep: Gll2733 protein - Gloeobacter violaceus
Length = 113
Score = 33.9 bits (74), Expect = 3.1
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 181 TVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSP--KPVAACAMPVMKGMRV 345
TV++AAA+ G+ IP C H G C C V V+ P + + AC V GM V
Sbjct: 58 TVVRAAARAGLAIPTQCRH------GFCATCEVHVQTGPQRRALRACVELVEPGMAV 108
>UniRef50_Q3C1E0 Cluster: Reductase component of terephthalate
1,2-dioxygenase; n=4; Comamonas|Rep: Reductase component
of terephthalate 1,2-dioxygenase - Comamonas sp. E6
Length = 336
Score = 33.9 bits (74), Expect = 3.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 130 KVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVE 282
++ + D PG +VL AA Q G+E+P C R GNC L++
Sbjct: 4 QIHIHDSDIAFPCAPGQSVLDAALQAGIELPYSC---RKGSCGNCASALLD 51
>UniRef50_Q7M9E9 Cluster: Sensor protein; n=1; Wolinella
succinogenes|Rep: Sensor protein - Wolinella
succinogenes
Length = 1019
Score = 33.5 bits (73), Expect = 4.2
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 37 PLSRALALTSPVRAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVE 216
P + +L +P + P D V E V F++ QP+H++ L+A A E
Sbjct: 791 PKTSKSSLQTPPSSLPCAKILLVDDVSDNREIVRAFLEGQPLHIIEAKDGLEAIAIAQKE 850
Query: 217 IP 222
+P
Sbjct: 851 LP 852
>UniRef50_A0X1Q2 Cluster: Ferredoxin; n=4; Gammaproteobacteria|Rep:
Ferredoxin - Shewanella pealeana ATCC 700345
Length = 109
Score = 33.5 bits (73), Expect = 4.2
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +1
Query: 133 VEVFIDDQPVHVVP-GTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVA 309
V + +D Q + + P +++ AA++ + IP C + G C+ CLVEV+ K
Sbjct: 7 VSMTVDGQRILISPQDANLVEVAAKLKINIPAPCLKSKRK-NGCCKACLVEVD--GKKAY 63
Query: 310 ACAMPVMKGMRVKTNS---DLTRKA 375
AC + M V + D RKA
Sbjct: 64 ACTTKPLANMNVTVRTRELDSIRKA 88
>UniRef50_Q7NCF8 Cluster: Tetrapyrrole methylase family protein;
n=1; Gloeobacter violaceus|Rep: Tetrapyrrole methylase
family protein - Gloeobacter violaceus
Length = 304
Score = 33.1 bits (72), Expect = 5.5
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 DDQPVHVVPGTTVLQAA-AQVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMP 324
++ PV V+PG + L AA A G PRF + L R LV + + +PV P
Sbjct: 125 ENLPVSVIPGPSALTAALALAGCTDPRFVFEGFLPTTSRRRERLVALAREERPVVLFEAP 184
>UniRef50_Q3SLY2 Cluster: Putative uncharacterized protein; n=1;
Thiobacillus denitrificans ATCC 25259|Rep: Putative
uncharacterized protein - Thiobacillus denitrificans
(strain ATCC 25259)
Length = 230
Score = 33.1 bits (72), Expect = 5.5
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 217 IPRFCYHERLAVAGNCRMCLVEV-EKSPKPVAACAMPVMKG-MRVKTNSDLTRKAREGVM 390
IPR YH LAVA CL E P+P AMP+ G +R + + T AR+
Sbjct: 83 IPRLKYHGALAVAPLLGECLTEACRTQPRPDRLLAMPLHAGRIRERGFNHATEIARDVAK 142
Query: 391 EFLLVNHPLDCPIC 432
L PLD C
Sbjct: 143 RLQL---PLDRDSC 153
>UniRef50_A6PSQ4 Cluster: N-(5'-phosphoribosyl)anthranilate
isomerase; n=1; Victivallis vadensis ATCC BAA-548|Rep:
N-(5'-phosphoribosyl)anthranilate isomerase -
Victivallis vadensis ATCC BAA-548
Length = 200
Score = 32.7 bits (71), Expect = 7.3
Identities = 26/91 (28%), Positives = 39/91 (42%)
Frame = +1
Query: 202 QVGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKARE 381
+VGV + R AGN + + ++P+ A MPV K + V+T +L R
Sbjct: 59 RVGVFVNEPAETIRRIAAGNLDVVQLHGTETPEFAARLGMPVWKAVHVETERELEMLERY 118
Query: 382 GVMEFLLVNHPLDCPICDQGGECDLQDQSMA 474
V FL D GG CD + ++A
Sbjct: 119 DVERFL-----FDAASGGSGGVCDWRLAALA 144
>UniRef50_A1S7F6 Cluster: Flavodoxin reductase (Ferredoxin-NADPH
reductase) family 1-like protein; n=1; Shewanella
amazonensis SB2B|Rep: Flavodoxin reductase
(Ferredoxin-NADPH reductase) family 1-like protein -
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Length = 336
Score = 32.7 bits (71), Expect = 7.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 142 FIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVEK 291
F+D+Q H G TVL A +VG I C G CR CL+ +++
Sbjct: 5 FLDNQRFHAESGETVLSALKRVGHPINYSC------TKGQCRSCLLRLDE 48
>UniRef50_A6GSY7 Cluster: Two component transcriptional regulator,
LuxR family protein; n=1; Limnobacter sp. MED105|Rep:
Two component transcriptional regulator, LuxR family
protein - Limnobacter sp. MED105
Length = 209
Score = 32.3 bits (70), Expect = 9.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 280 EVEKSPKPVAACAMPVMKGMRVKTNSDLTRKARE 381
E+ SPK V+ +++ MR+KTN +LTR A E
Sbjct: 172 ELSLSPKTVSVYRARILEKMRMKTNGELTRYALE 205
>UniRef50_A6GAG4 Cluster: RTX toxins and related Ca2+-binding
protein; n=1; Plesiocystis pacifica SIR-1|Rep: RTX
toxins and related Ca2+-binding protein - Plesiocystis
pacifica SIR-1
Length = 320
Score = 32.3 bits (70), Expect = 9.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 340 RVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFS 516
R T ++L + GV + L V H +D P CD+ G C ++ S D+H S
Sbjct: 262 RRSTPAELEPLSAAGV-DALSVRH-VDAPTCDERGNCAVERSSFGHAGGVGELVDLHLS 318
>UniRef50_A5FXZ0 Cluster: Ferredoxin; n=1; Acidiphilium cryptum
JF-5|Rep: Ferredoxin - Acidiphilium cryptum (strain
JF-5)
Length = 356
Score = 32.3 bits (70), Expect = 9.6
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +1
Query: 133 VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEVE 288
V V D V P T+LQAA G+ P C R+ G C+ LVE E
Sbjct: 17 VRVLPADLSFDVPPKQTILQAALDQGIAYPHSC---RVGSCGTCKTRLVEGE 65
>UniRef50_A3Y6P5 Cluster: Putative uncharacterized protein; n=1;
Marinomonas sp. MED121|Rep: Putative uncharacterized
protein - Marinomonas sp. MED121
Length = 258
Score = 32.3 bits (70), Expect = 9.6
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 268 MCLVEVEKSPKPVAACA--MPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQ 438
+C++E+E+S PVAA + K + T S R G++ +LL LD P+ +Q
Sbjct: 67 VCILEIEQSADPVAALSAYFKQTKSDIILTGSQAERGESSGMLPYLLAK-SLDLPVINQ 124
>UniRef50_A3ULR6 Cluster: Putative uncharacterized protein; n=1;
Vibrio splendidus 12B01|Rep: Putative uncharacterized
protein - Vibrio splendidus 12B01
Length = 725
Score = 32.3 bits (70), Expect = 9.6
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 61 TSPVRAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQ 204
T VRA L R+ D++ P EV I+D +V+ TTV AA Q
Sbjct: 330 TMSVRALHLHRRKLLDEINRSPILDEVAINDYSANVLLMTTVYTAATQ 377
>UniRef50_Q4XPF3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 656
Score = 32.3 bits (70), Expect = 9.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 228 ESRNFHSNLSGSL-KNSCAWYYMNWLVVNKDFYFLWLSLHLISK 100
ES + H N L K C + Y+N+ N + + LWL H ISK
Sbjct: 307 ESSDIHKNYEILLNKLKCRFDYLNFFFCNIENFMLWLYQHKISK 350
>UniRef50_Q2NEH4 Cluster: Glutamyl-tRNA reductase; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Glutamyl-tRNA
reductase - Methanosphaera stadtmanae (strain DSM 3091)
Length = 395
Score = 32.3 bits (70), Expect = 9.6
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 463 QSMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIR 603
+SM G D+ I + K A+++K +GP ++ + T+ IH + IR
Sbjct: 86 ESMIMGEDQI-LGQIKTARKNAIKNKTIGPKLEKVFTKAIHVGQTIR 131
>UniRef50_Q18EI2 Cluster: ISH4-type transposase; n=2;
Halobacteriaceae|Rep: ISH4-type transposase -
Haloquadratum walsbyi (strain DSM 16790)
Length = 157
Score = 32.3 bits (70), Expect = 9.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 345 HTHTLHNRHCTCSNWFRRFLNFNKTH 268
HT++ NRH NW RRF +K H
Sbjct: 104 HTNSCENRHSFLRNWLRRFRGVSKHH 129
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,017,715
Number of Sequences: 1657284
Number of extensions: 11216734
Number of successful extensions: 33532
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 31852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33329
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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