Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g11f
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    28   1.3  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   5.1  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   6.7  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +1

Query: 220 PRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFL 399
           P+ C+      A +CR  L EV+  P        P+ K  R  ++   T      + E +
Sbjct: 565 PQLCFEFLDKEADSCRDRLTEVKSEPPKAVIYEEPLNKLSRFSSDRLFTSHELVAIAELI 624

Query: 400 LVNHP 414
            +N P
Sbjct: 625 SLNEP 629


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 417 KRVVY*EELHNTFTRLPCEVRIGLHTHTLHNRHCTC-SNWFRRFLN 283
           K +V  E L+NT     C +   +  + + N H  C   W +R +N
Sbjct: 198 KVIVTKERLYNTLAHEVCHLACWIIDNEMQNPHGACFKAWGKRIMN 243


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 240 FMVAESRNFHSNLSGSLKNSCAWYYMNWLVVNKD 139
           F +  + +  + L GS+K + A Y +N +V NKD
Sbjct: 444 FKLLAAYSKEAQLPGSIKQNIAQYLINDVVPNKD 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,412
Number of Sequences: 5004
Number of extensions: 45784
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)