Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11g11f
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542... 266 1e-71
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 31 0.74
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 31 0.74
01_01_0248 + 2041015-2041762,2042112-2042149 31 0.97
03_05_0557 + 25605355-25605798 29 2.3
03_02_0208 + 6420576-6420658,6421640-6421753,6421848-6422379,642... 28 5.2
01_06_1239 + 35652053-35654050 28 5.2
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 27 9.1
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 9.1
>03_05_0903 -
28652447-28653346,28653890-28654056,28654075-28654264,
28654916-28655210,28655514-28655760,28656017-28656443
Length = 741
Score = 266 bits (651), Expect = 1e-71
Identities = 118/172 (68%), Positives = 145/172 (84%), Gaps = 1/172 (0%)
Frame = +1
Query: 109 QVQAQPEK-VEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAVAGNCRMCLVEV 285
++ + PE +EVF+D V + G TVLQA GV+IPRFCYH RL++AGNCRMCLVEV
Sbjct: 67 ELPSNPEDALEVFVDGHAVRIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEV 126
Query: 286 EKSPKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEFLLVNHPLDCPICDQGGECDLQDQ 465
EKSPKPVA+CAMP + GM++KTN+ + +KAREGVMEFLL+NHPLDCPICDQGGECDLQDQ
Sbjct: 127 EKSPKPVASCAMPALPGMKIKTNTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQ 186
Query: 466 SMAFGSDKSRFTDIHFSGKRAVEDKDVGPLIKTIMTRCIHCTRCIRFASEVA 621
SMAFG+D+ RFT++ KR+V DK++GPL+KT+MTRCI CTRC+RFASEVA
Sbjct: 187 SMAFGADRGRFTEM----KRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVA 234
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 10 DTQKKMLRQPLSRALALTSPVRAAPLTARRFADQVQAQPEKVEVFID 150
D K+ LRQP + L A P T+ FADQ +A EKV+ ID
Sbjct: 84 DADKEYLRQPRVIRVGLIQNSIAIPTTSH-FADQKKAIMEKVKPMID 129
>01_06_1795 - 39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 7 PDTQKKMLRQPLSRALALTSPVRAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTT 183
P + L P ++ L P A+P+ + A P+ + +F DD V G+T
Sbjct: 845 PVSSSPPLADPFTQLEGLLGPASASPVVSETPASSTSKTPDLMSIFSDDVQTGVTSGST 903
>01_01_0248 + 2041015-2041762,2042112-2042149
Length = 261
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 319 MPVMKGMRVKTNSDLTRKAREG-VMEFLLVNHPLDCPICD-QGGECDLQDQSMAFG 480
+PV+ +++ D R G ++E+ V P DC C+ GGEC +MAFG
Sbjct: 183 VPVLPWSELRSAGDYAGFVRRGFLLEWAAV--PGDCAACNGSGGECRYDAGAMAFG 236
>03_05_0557 + 25605355-25605798
Length = 147
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 73 RAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAAAQVGVEIPRFCYHERLAV 252
R +PL A +A +E + + V V G T+L A G+++P C +L V
Sbjct: 30 RRSPLRAAPAPPPPRAYKVTIEHGGESRVVEVEEGETILSRALDEGIDVPHDC---KLGV 86
Query: 253 AGNC--RMCLVEVEKS 294
C R+ EV++S
Sbjct: 87 CMTCPARLVAGEVDQS 102
>03_02_0208 +
6420576-6420658,6421640-6421753,6421848-6422379,
6422452-6422605,6422655-6422947
Length = 391
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 166 VVPGTTVLQAAAQVGVEIPRFCYHERLAV---AGNCRMC 273
VVPG ++ A+VG + RF + + V A CR C
Sbjct: 63 VVPGHEIVGVVAEVGSSVARFAAGDTVGVGYIASTCRAC 101
>01_06_1239 + 35652053-35654050
Length = 665
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2
Query: 311 AATGLGDFSTSTRHMRQLPATAKRSW 234
AAT L S+S+ H R+LPATAK W
Sbjct: 13 AATALPSPSSSSSH-RRLPATAKSVW 37
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -1
Query: 399 EELHNTFTRLPCEVRIGLHTHTLHNRHC---TCSNWFRRF 289
+++ T +P E GL H LH RH T NWF F
Sbjct: 94 DQIDGTHEVIP-EADGGLRGHALHGRHALRHTAGNWFSCF 132
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 385 VMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFSGKRAVEDKDV 546
++E + N PL P +G DLQD++ G K+ ++ H EDK V
Sbjct: 3918 IVETNVCNEPL-APKDVEGEVVDLQDETFYIGEPKATKSEDHNENNTEEEDKMV 3970
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,546,938
Number of Sequences: 37544
Number of extensions: 329848
Number of successful extensions: 949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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